Source code for mantidimaging.core.utility.histogram

# Copyright (C) 2022 ISIS Rutherford Appleton Laboratory UKRI
# SPDX - License - Identifier: GPL-3.0-or-later

import numpy as np

from typing import TYPE_CHECKING
if TYPE_CHECKING:
    from pyqtgraph import HistogramLUTItem

DEFAULT_NUM_BINS = 2048



[docs]
def set_histogram_log_scale(histogram: 'HistogramLUTItem'):
    """
    Sets the y-values of a histogram to use a log scale.
    :param histogram: The HistogramLUTItem of an image.
    """
    x_data, y_data = histogram.plot.getData()
    histogram.plot.setData(x_data, np.log(y_data + 1))




[docs]
def generate_histogram_from_image(image_data, num_bins=DEFAULT_NUM_BINS):
    histogram, bins = np.histogram(image_data.flatten(), num_bins)
    center = (bins[:-1] + bins[1:]) / 2
    return center, histogram, bins