mantidimaging.core.tools.tomopy_tool module

class mantidimaging.core.tools.tomopy_tool.TomoPyTool[source]

Bases: AbstractTool

static check_algorithm_compatibility(algorithm)[source]
import_self()[source]
run_reconstruct(sample, config, proj_angles=None, progress=None, **kwargs)[source]

Run a reconstruction with TomoPy, using the CPU algorithms they provide.

Information for each reconstruction method is available at

http://tomopy.readthedocs.io/en/latest/api/tomopy.recon.algorithm.html

Parameters:

  • sample – The sample image data as a 3D numpy.ndarray

  • config –

    A ReconstructionConfig with all the necessary parameters to run a reconstruction. The Centers of Rotation

    must be interpolated independently!

  • proj_angles – The projection angle for each slice. If not provided equidistant angles will be generated

  • kwargs – Any keyword arguments will be forwarded to the TomoPy reconstruction function

Returns:

The reconstructed volume

static tool_supported_methods()[source]
mantidimaging.core.tools.tomopy_tool.run_reconstruct(sample, config, proj_angles=None, **kwargs)[source]

Module function for running a reconstruction.

It will create the tomopy tool object at runtime.

Parameters:

  • sample – The sample image data as a 3D numpy.ndarray

  • config –

    A ReconstructionConfig with all the necessary parameters to run a reconstruction. The Centers of Rotation

    must be interpolated independently!

  • proj_angles – The projection angle for each slice. If not provided equidistant angles will be generated

  • kwargs – Any keyword arguments will be forwarded to the TomoPy reconstruction function

Returns:

The reconstructed volume