Index

A

AbstractTool (class in mantidimaging.core.tools.abstract_tool) accept() (mantidimaging.gui.windows.main.nexus_save_dialog.NexusSaveDialog method) actionCompareImages (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionExit (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionFilters (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionLoad180deg (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionLoadDataset (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionLoadImages (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionLoadNeXusFile (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionLoadProjectionAngles (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionRecon (mantidimaging.gui.windows.main.view.MainWindowView attribute) actions (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView property) actionSampleLoadLog (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionSaveImages (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionSaveNeXusFile (mantidimaging.gui.windows.main.view.MainWindowView attribute) actionSpectrumViewer (mantidimaging.gui.windows.main.view.MainWindowView attribute) active_stacks (mantidimaging.gui.windows.main.presenter.MainWindowPresenter property) add() (mantidimaging.core.utility.leak_tracker.LeakTracker method) add_180_deg_file_to_dataset() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_180_deg_to_dataset() (mantidimaging.gui.windows.main.model.MainWindowModel method) add_actions() (mantidimaging.gui.widgets.indicator_icon.view.IndicatorIconView method) add_alternative_180_if_required() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_auto_color_menu_action() (mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu.AutoColorMenu method) add_axis_sibling() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) add_child_item_to_tree_view() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_column() (mantidimaging.core.io.csv_output.CSVOutput method) ADD_COR (mantidimaging.gui.windows.recon.presenter.Notifications attribute) add_cor_table_row() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) add_dataset_to_model() (mantidimaging.gui.windows.main.model.MainWindowModel method) add_difference_overlay() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) add_estimated_steps() (mantidimaging.core.utility.progress_reporting.progress.Progress method) add_hist_sibling() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) add_issues() (mantidimaging.gui.windows.welcome_screen.view.WelcomeScreenView method) add_item_to_tree_view() (mantidimaging.gui.windows.main.view.MainWindowView method) add_link() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter method) (mantidimaging.gui.windows.welcome_screen.view.WelcomeScreenView method) add_log_to_sample() (mantidimaging.gui.windows.main.model.MainWindowModel method) (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_mixed_dataset_to_model_and_update_view() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) add_negative_overlay() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) add_point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) add_progress_handler() (mantidimaging.core.utility.progress_reporting.progress.Progress method) add_projection_angles_to_sample() (mantidimaging.gui.windows.main.model.MainWindowModel method) (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_property_to_form() (in module mantidimaging.gui.utility.qt_helpers) add_range() (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget method) ADD_RECON (mantidimaging.gui.windows.main.presenter.Notification attribute) add_recon_group() (mantidimaging.gui.windows.main.view.MainWindowView static method) add_recon_item_to_tree_view() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_recon_to_dataset() (mantidimaging.gui.windows.main.model.MainWindowModel method) (mantidimaging.gui.windows.main.view.MainWindowView method) add_roi() (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget method) add_sinograms_to_dataset_and_update_view() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_sinograms_to_model_and_update_view() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) add_stack_to_dictionary() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) add_stage() (mantidimaging.gui.windows.wizard.view.WizardView method) add_step() (mantidimaging.gui.windows.wizard.view.WizardStage method) (mantidimaging.gui.windows.wizard.view.WizardView method)

addBtn (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) adjust() (mantidimaging.gui.dialogs.cor_inspection.model.CORInspectionDialogModel method) Advanced (mantidimaging.core.operations.base_filter.FilterGroup attribute) algorithm (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.widgets.palette_changer.view.PaletteChangerView property) ALGORITHM_CHANGED (mantidimaging.gui.windows.recon.presenter.Notifications attribute) algorithm_name (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) algorithmComboBox (mantidimaging.gui.widgets.palette_changer.view.PaletteChangerView attribute) algorithmName (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) all (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.dataset.MixedDataset property) (mantidimaging.core.data.dataset.StrictDataset property) all_files() (mantidimaging.core.io.filenames.FilenameGroup method) all_image_ids (mantidimaging.core.data.dataset.BaseDataset property) allowed_filters() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method) allowed_recon_kwargs() (in module mantidimaging.core.reconstruct.astra_recon) (in module mantidimaging.core.reconstruct.cil_recon) (in module mantidimaging.core.reconstruct.tomopy_recon) allPushButton (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) alpha (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) alphaSpinbox (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) AndPredicate (class in mantidimaging.gui.windows.wizard.model) angle_in_degrees (mantidimaging.core.rotation.data_model.CorTiltDataModel property) appendNewRow() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) APPLY_FILTER (mantidimaging.gui.windows.operations.presenter.Notification attribute) APPLY_FILTER_TO_ALL (mantidimaging.gui.windows.operations.presenter.Notification attribute) apply_ops() (mantidimaging.gui.dialogs.op_history_copy.model.OpHistoryCopyDialogModel method) apply_to_images() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) apply_to_stacks() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) applyButton (mantidimaging.gui.dialogs.op_history_copy.view.OpHistoryCopyDialogView attribute) (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) applyToAllButton (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) ArithmeticFilter (class in mantidimaging.core.operations.arithmetic.arithmetic) array (mantidimaging.core.parallel.utility.SharedArrayProxy property) array_proxy (mantidimaging.core.parallel.utility.SharedArray property) ask_confirmation() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) ask_to_use_closest_to_180() (mantidimaging.gui.windows.main.view.MainWindowView method) AstraRecon (class in mantidimaging.core.reconstruct.astra_recon) AsyncTaskDialogModel (class in mantidimaging.gui.dialogs.async_task.model) AsyncTaskDialogPresenter (class in mantidimaging.gui.dialogs.async_task.presenter) AsyncTaskDialogView (class in mantidimaging.gui.dialogs.async_task.view) AUTO_FIND_COR_CORRELATE (mantidimaging.gui.windows.recon.presenter.Notifications attribute) AUTO_FIND_COR_MINIMISE (mantidimaging.gui.windows.recon.presenter.Notifications attribute) auto_find_correlation() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) auto_find_flat_stack() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) auto_find_minimisation_sqsum() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) auto_range() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) auto_range_image() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) auto_update_triggered (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) AutoColorMenu (class in mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu) AutoCorMethod (class in mantidimaging.gui.windows.recon.presenter) autorange_histograms() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method)

B

backend_message (mantidimaging.gui.windows.main.view.MainWindowView attribute) BadDataCheck (class in mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay) BadDataOverlay (class in mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay) BaseDataset (class in mantidimaging.core.data.dataset) BaseDialogView (class in mantidimaging.gui.mvp_base.view) BaseFilter (class in mantidimaging.core.operations.base_filter) BaseMainWindowView (class in mantidimaging.gui.mvp_base.view) BasePresenter (class in mantidimaging.gui.mvp_base.presenter) BaseRecon (class in mantidimaging.core.reconstruct.base_recon) Basic (mantidimaging.core.operations.base_filter.FilterGroup attribute)

beam_hardening_coefs (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) BlockQtSignals (class in mantidimaging.gui.utility.qt_helpers) BOOL (mantidimaging.gui.utility.qt_helpers.Type attribute) bottom (mantidimaging.core.utility.sensible_roi.SensibleROI attribute) build_context_menu() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) build_metadata_tree() (mantidimaging.gui.windows.stack_visualiser.metadata_dialog.MetadataDialog static method) build_operation_row() (mantidimaging.gui.dialogs.op_history_copy.view.OpHistoryCopyDialogView static method) BUTTON (mantidimaging.gui.utility.qt_helpers.Type attribute) buttonBox (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute)

C

calculate_chunksize() (in module mantidimaging.core.parallel.utility) CALCULATE_CORS_FROM_MANUAL_TILT (mantidimaging.gui.windows.recon.presenter.Notifications attribute) calculate_mean_time() (mantidimaging.core.utility.progress_reporting.progress.Progress static method) calculateCors (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) call_with_known_parameters() (in module mantidimaging.core.utility.func_call) cancel() (mantidimaging.core.utility.progress_reporting.progress.Progress method) CENTRE_OF_ROTATION (mantidimaging.gui.windows.recon.point_table_model.Column attribute) change_colour_palette() (mantidimaging.gui.widgets.palette_changer.presenter.PaletteChangerPresenter method) change_colour_palette_dialog (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) change_refine_iterations() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) change_window_name_clicked() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) changeColourPaletteButton (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) check_algorithm_compatibility() (mantidimaging.core.tools.abstract_tool.AbstractTool static method) (mantidimaging.core.tools.tomopy_tool.TomoPyTool static method) check_availability() (in module mantidimaging.core.utility.optional_imports) check_data_stack() (in module mantidimaging.helper) check_for_bad_data() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay method) check_function (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataCheck attribute) check_issues() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter method) check_stack_for_invalid_180_deg_proj() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) checkPointMove() (mantidimaging.gui.widgets.line_profile_plot.view.ImageViewLineROI method) CheckVersion (class in mantidimaging.core.utility.version_check) CHOICE (mantidimaging.gui.utility.qt_helpers.Type attribute) CHOOSE_NEW_DATA (mantidimaging.gui.windows.stack_choice.view.Notification attribute) choose_nexus_file() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) CHOOSE_ORIGINAL (mantidimaging.gui.windows.stack_choice.view.Notification attribute) chooseFileButton (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) CILRecon (class in mantidimaging.core.reconstruct.cil_recon) CircularMaskFilter (class in mantidimaging.core.operations.circular_mask.circular_mask) cleanup() (mantidimaging.gui.mvp_base.view.BaseMainWindowView method) (mantidimaging.gui.windows.main.view.MainWindowView method) (mantidimaging.gui.windows.operations.view.FiltersWindowView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) clear() (mantidimaging.core.utility.leak_tracker.LeakTracker method) (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataCheck method) (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) CLEAR_ALL_CORS (mantidimaging.gui.windows.recon.presenter.Notifications attribute) clear_cor_table() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) clear_data() (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget method) clear_instance() (mantidimaging.core.utility.cuda_check.CudaChecker class method) clear_items() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) clear_memory_from_current_process_linux() (in module mantidimaging.core.parallel.manager) clear_notification_dialog() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) clear_overlays() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay method) clear_plot() (mantidimaging.gui.widgets.line_profile_plot.view.LineProfilePlot method) clear_points() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) clear_previews() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) clear_proj180deg() (mantidimaging.core.data.imagestack.ImageStack method) clear_projection() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) clear_recon() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) clear_recon_line_profile() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) clear_results() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) clear_sinogram() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) clear_widgets() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) clearAllBtn (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) ClipValuesFilter (class in mantidimaging.core.operations.clip_values.clip_values) close() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) close_steps (mantidimaging.gui.windows.wizard.view.WizardView attribute) close_view() (mantidimaging.gui.windows.stack_choice.presenter.StackChoicePresenter method) CloseEnoughPoint (class in mantidimaging.core.utility.close_enough_point) closeEvent() (mantidimaging.gui.mvp_base.view.BaseMainWindowView method) (mantidimaging.gui.windows.main.view.MainWindowView method) (mantidimaging.gui.windows.operations.view.FiltersWindowView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) (mantidimaging.gui.windows.stack_choice.view.StackChoiceView method) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) collapseToggleButton (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) colour_map (mantidimaging.gui.widgets.palette_changer.view.PaletteChangerView property) colourMapComboBox (mantidimaging.gui.widgets.palette_changer.view.PaletteChangerView attribute) Column (class in mantidimaging.gui.windows.recon.point_table_model) columnCount() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) CommandLineArguments (class in mantidimaging.core.utility.command_line_arguments) CompareSlicesView (class in mantidimaging.gui.dialogs.cor_inspection.recon_slice_view) compile_ui() (in module mantidimaging.gui.utility.qt_helpers) completion() (mantidimaging.core.utility.progress_reporting.progress.Progress method)

compute_function() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) compute_function_2d() (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) compute_function_2d_sino() (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) compute_function_sino() (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) conda_update_message() (mantidimaging.core.utility.version_check.CheckVersion method) connect_histogram_changes() (mantidimaging.gui.windows.stack_choice.view.StackChoiceView method) ConsoleProgressBar (class in mantidimaging.core.utility.progress_reporting.console_progress_bar) context_actions (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView property) copy (mantidimaging.gui.dialogs.op_history_copy.view.OpHistoryCopyDialogView property) copy() (mantidimaging.core.data.imagestack.ImageStack method) copy_into_shared_memory() (in module mantidimaging.core.parallel.utility) copy_metadata_to_clipboard() (mantidimaging.gui.windows.stack_visualiser.metadata_dialog.MetadataDialog method) copy_roi() (mantidimaging.core.data.imagestack.ImageStack method) copy_roi_to_clipboard() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) cor (mantidimaging.core.rotation.data_model.CorTiltDataModel property) (mantidimaging.core.rotation.data_model.Point attribute) (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) cor() (mantidimaging.gui.dialogs.cor_inspection.model.CORInspectionDialogModel method) cor_extents (mantidimaging.gui.dialogs.cor_inspection.model.CORInspectionDialogModel property) COR_FIT (mantidimaging.gui.windows.recon.presenter.Notifications attribute) cor_table_model (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) corHelpButton (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) CORInspectionDialogModel (class in mantidimaging.gui.dialogs.cor_inspection.model) CORInspectionDialogPresenter (class in mantidimaging.gui.dialogs.cor_inspection.presenter) CORInspectionDialogView (class in mantidimaging.gui.dialogs.cor_inspection.view) correlateBtn (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) CORRELATION (mantidimaging.gui.windows.recon.presenter.AutoCorMethod attribute) cors (mantidimaging.core.rotation.data_model.CorTiltDataModel property) (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) CorTiltDataModel (class in mantidimaging.core.rotation.data_model) CorTiltPointQtModel (class in mantidimaging.gui.windows.recon.point_table_model) count() (mantidimaging.core.data.imagestack.ImageStack method) (mantidimaging.core.utility.leak_tracker.LeakTracker method) Counts (class in mantidimaging.core.utility.data_containers) counts() (mantidimaging.core.data.imagestack.ImageStack method) (mantidimaging.core.utility.imat_log_file_parser.IMATLogFile method) COUNTS_AFTER (mantidimaging.core.utility.imat_log_file_parser.IMATLogColumn attribute) COUNTS_BEFORE (mantidimaging.core.utility.imat_log_file_parser.IMATLogColumn attribute) create_and_start_pool() (in module mantidimaging.core.parallel.manager) create_array() (in module mantidimaging.core.parallel.utility) create_child_tree_item() (mantidimaging.gui.windows.main.view.MainWindowView static method) create_dataset_tree_widget_item() (mantidimaging.gui.windows.main.view.MainWindowView method) create_empty_image_stack() (mantidimaging.core.data.imagestack.ImageStack static method) create_file_input() (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog method) create_loading_parameters_for_file_path() (in module mantidimaging.core.io.loader.loader) create_mixed_dataset_stack_windows() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) create_mixed_dataset_tree_view_items() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) create_new_stack() (mantidimaging.gui.windows.main.view.MainWindowView method) create_partial() (in module mantidimaging.core.parallel.shared) create_single_tabbed_images_stack() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) create_stack_window() (mantidimaging.gui.windows.main.view.MainWindowView method) create_strict_dataset_stack_windows() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) create_strict_dataset_tree_view_items() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) create_swapped_axis_stack() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) created (mantidimaging.core.utility.leak_tracker.ItemInfo attribute) CropCoordinatesFilter (class in mantidimaging.core.operations.crop_coords.crop_coords) CSVLogParser (class in mantidimaging.core.utility.imat_log_file_parser) CSVOutput (class in mantidimaging.core.io.csv_output) cuda_is_present() (mantidimaging.core.utility.cuda_check.CudaChecker class method) CudaChecker (class in mantidimaging.core.utility.cuda_check) CudaExecuter (class in mantidimaging.core.gpu.utility) CURRENT (mantidimaging.gui.dialogs.cor_inspection.types.ImageType attribute) current() (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView method) current_dataset_id (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView property) current_norm_stack_uuid (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter attribute) current_roi (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView property) current_showing_stack() (mantidimaging.gui.windows.main.view.MainWindowView method) current_stack_uuid (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter attribute) currentButton (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute)

D

dark_after (mantidimaging.core.data.dataset.StrictDataset attribute) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) dark_before (mantidimaging.core.data.dataset.StrictDataset attribute) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) DarkField (mantidimaging.gui.windows.nexus_load_dialog.presenter.ImageKeys attribute) data (mantidimaging.core.data.imagestack.ImageStack property) data() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) dataset_selected_uuid (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView attribute) DatasetId (class in mantidimaging.gui.windows.main.presenter) datasets (mantidimaging.gui.windows.main.presenter.MainWindowPresenter property) datasets_updated (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView attribute) DatasetSelectorDialog (class in mantidimaging.gui.widgets.dataset_selector_dialog.dataset_selector_dialog) DatasetSelectorWidgetPresenter (class in mantidimaging.gui.widgets.dataset_selector.presenter) DatasetSelectorWidgetView (class in mantidimaging.gui.widgets.dataset_selector.view) debug_log_memory_usage_linux() (in module mantidimaging.core.utility.memory_usage) Degrees (class in mantidimaging.core.utility.data_containers) delete_all_widgets_from_layout() (in module mantidimaging.gui.utility.qt_helpers) delete_data() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) delete_recons() (mantidimaging.core.data.dataset.BaseDataset method) delete_stack() (mantidimaging.core.data.dataset.BaseDataset method) (mantidimaging.core.data.dataset.MixedDataset method) (mantidimaging.core.data.dataset.StrictDataset method) deserialize_metadata() (in module mantidimaging.core.operation_history.operations) details (mantidimaging.gui.widgets.mi_image_view.view.MIImageView attribute) directory() (mantidimaging.gui.windows.image_load_dialog.field.Field method) disable_check() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay method) disable_ok_button() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) disconnect_histogram_changes() (mantidimaging.gui.windows.stack_choice.view.StackChoiceView method) display_normalise_error() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) display_op_history() (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter method) (mantidimaging.gui.dialogs.op_history_copy.view.OpHistoryCopyDialogView method) DivideFilter (class in mantidimaging.core.operations.divide.divide) divider (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter attribute) do_add_cor() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_algorithm_changed() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_apply_filter() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) do_apply_filter_sync() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) do_apply_filter_to_all() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) do_apply_ops() (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter method) do_calculate_correlation_err() (in module mantidimaging.core.rotation.polyfit_correlation)

do_calculate_cors_from_manual_tilt() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_check() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataCheck method) do_clean_up_original_data() (mantidimaging.gui.windows.stack_choice.presenter.StackChoicePresenter method) do_clear_all_cors() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_cor_fit() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_execute_async() (mantidimaging.gui.dialogs.async_task.model.AsyncTaskDialogModel method) do_fit() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) do_images_saving() (mantidimaging.gui.windows.main.model.MainWindowModel method) do_importing() (in module mantidimaging.core.tools.importer) do_load_dataset() (mantidimaging.gui.windows.main.model.MainWindowModel method) do_nexus_saving() (mantidimaging.gui.windows.main.model.MainWindowModel method) do_preview_reconstruct_slice() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_reapply_original_data() (mantidimaging.gui.windows.stack_choice.presenter.StackChoicePresenter method) do_reconstruct_volume() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_refresh() (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter method) do_register_active_filter() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) do_reload_datasets() (mantidimaging.gui.widgets.dataset_selector.presenter.DatasetSelectorWidgetPresenter method) do_remove_selected_cor() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_scroll_preview() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) do_select_eligible_stack() (mantidimaging.gui.widgets.dataset_selector.presenter.DatasetSelectorWidgetPresenter method) do_selected_ops_changed() (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter method) do_set_up() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter method) do_stack_reconstruct_slice() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_start_processing() (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter method) do_toggle_lock_histograms() (mantidimaging.gui.windows.stack_choice.presenter_base.StackChoicePresenterMixin method) do_update_field() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) do_update_flat_or_dark() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) do_update_previews() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) do_update_projection() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) do_update_sample() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) do_update_sample_log() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) do_update_single_file() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) do_update_ui_parameters() (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter method) dragEnterEvent() (mantidimaging.gui.windows.main.view.MainWindowView method) dropEvent() (mantidimaging.gui.windows.main.view.MainWindowView method) dtype (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) DUPE_STACK (mantidimaging.gui.windows.stack_visualiser.presenter.SVNotification attribute) dupe_stack() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) DUPE_STACK_ROI (mantidimaging.gui.windows.stack_visualiser.presenter.SVNotification attribute) dupe_stack_roi() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method)

E

empty (mantidimaging.core.rotation.data_model.CorTiltDataModel property) enable_check() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay method) enable_correct_fields_only() (in module mantidimaging.core.operations.flat_fielding.flat_fielding) (in module mantidimaging.core.operations.nan_removal.nan_removal) (in module mantidimaging.core.operations.roi_normalisation.roi_normalisation) enable_nan_check() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay method) enable_nonpositive_check() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay method) (mantidimaging.gui.windows.stack_choice.presenter.StackChoicePresenter method) enable_preview_all_buttons() (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog method) enable_save() (mantidimaging.gui.windows.main.nexus_save_dialog.NexusSaveDialog method) EnablePredicate (class in mantidimaging.gui.windows.wizard.model) EnablePredicateFactory() (in module mantidimaging.gui.windows.wizard.model) end (mantidimaging.core.utility.data_containers.Indices attribute) end_pool() (in module mantidimaging.core.parallel.manager) enough_memory() (in module mantidimaging.core.parallel.utility) ensure_instance() (mantidimaging.core.utility.progress_reporting.progress.Progress static method) ensure_sample_log_consistency() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) ensure_tuple() (in module mantidimaging.gui.windows.operations.model) error (mantidimaging.gui.dialogs.async_task.task.TaskWorkerThread attribute) ERROR_MESSAGE (mantidimaging.core.utility.projection_angle_parser.ProjectionAngleFileParser attribute) ERROR_STRING (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter attribute) execute() (in module mantidimaging.core.io.loader.img_loader) (in module mantidimaging.core.parallel.shared) (in module mantidimaging.core.utility.cor_interpolate) (in module mantidimaging.gui.gui) execute_image_file_load() (mantidimaging.gui.windows.main.view.MainWindowView method) execute_image_file_save() (mantidimaging.gui.windows.main.view.MainWindowView method) execute_impl() (in module mantidimaging.core.parallel.utility) execute_nexus_load() (mantidimaging.gui.windows.main.view.MainWindowView method)

execute_nexus_save() (mantidimaging.gui.windows.main.view.MainWindowView method) execute_single() (in module mantidimaging.core.operations.crop_coords.crop_coords) execute_wrapper() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter static method) (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter static method) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter static method) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.rebin.rebin.RebinFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter static method) execution_time() (mantidimaging.core.utility.progress_reporting.progress.Progress method) ExecutionTimer (class in mantidimaging.core.utility.execution_timer) EXPECTED_HEADER_FOR_IMAT_CSV_LOG_FILE (mantidimaging.core.utility.imat_log_file_parser.CSVLogParser attribute) EXPECTED_HEADER_FOR_IMAT_TEXT_LOG_FILE (mantidimaging.core.utility.imat_log_file_parser.TextLogParser attribute) exportButton (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView attribute) extend_roi_plot_mouse_press_handler() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method)

F

Field (class in mantidimaging.gui.windows.image_load_dialog.field) fields (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog attribute) file() (mantidimaging.gui.windows.image_load_dialog.field.Field method) FileInformation (class in mantidimaging.core.io.loader.loader) FilenameGroup (class in mantidimaging.core.io.filenames) FilenamePattern (class in mantidimaging.core.io.filenames) filenames (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.io.loader.loader.FileInformation attribute) filePathLineEdit (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) filter_applied (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) filter_array() (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) FILTER_CLASS (mantidimaging.core.operations.loader.OperationModule attribute) filter_func() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter class method) (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter static method) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter static method) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.rebin.rebin.RebinFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter class method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter class method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter class method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter class method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter static method) filter_name (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter attribute) (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter attribute) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter attribute) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter attribute) (mantidimaging.core.operations.divide.divide.DivideFilter attribute) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter attribute) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter attribute) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter attribute) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation attribute) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter attribute) (mantidimaging.core.operations.outliers.outliers.OutliersFilter attribute) (mantidimaging.core.operations.rebin.rebin.RebinFilter attribute) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter attribute) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter attribute) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter attribute) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter attribute) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter attribute) (mantidimaging.core.operations.rescale.rescale.RescaleFilter attribute) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter attribute) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter attribute) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter attribute) (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView property)

filter_names (mantidimaging.gui.windows.operations.model.FiltersWindowModel property) filter_registration_func() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) filter_uses_parameter() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) filter_widget_kwargs (mantidimaging.gui.windows.operations.model.FiltersWindowModel attribute) FilterGroup (class in mantidimaging.core.operations.base_filter) filterName (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) FilterPreviews (class in mantidimaging.gui.windows.operations.filter_previews) filters (mantidimaging.gui.windows.main.view.MainWindowView attribute) (mantidimaging.gui.windows.operations.model.FiltersWindowModel attribute) filterSelector (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) FiltersWindowModel (class in mantidimaging.gui.windows.operations.model) FiltersWindowPresenter (class in mantidimaging.gui.windows.operations.presenter) FiltersWindowView (class in mantidimaging.gui.windows.operations.view) find_180deg_proj() (in module mantidimaging.core.io.utility) find_all_files() (mantidimaging.core.io.filenames.FilenameGroup method) find_and_verify_sample_log() (in module mantidimaging.core.io.loader.loader) find_center() (in module mantidimaging.core.rotation.polyfit_correlation) find_conda_executable() (mantidimaging.core.utility.version_check.CheckVersion static method) find_cor() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method) find_first_file_that_is_possibly_a_sample() (in module mantidimaging.core.io.utility) find_image_from_angle() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) find_images() (in module mantidimaging.core.io.utility) find_images_in_same_directory() (in module mantidimaging.core.io.utility) find_initial_cor() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) find_log() (in module mantidimaging.core.io.utility) find_log_file() (mantidimaging.core.io.filenames.FilenameGroup method) find_memory_from_previous_process_linux() (in module mantidimaging.core.parallel.manager) find_owners() (in module mantidimaging.core.utility.leak_tracker) find_parser() (mantidimaging.core.utility.imat_log_file_parser.IMATLogFile static method) find_projection_closest_to_180() (in module mantidimaging.core.io.utility) flags() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) flat_after (mantidimaging.core.data.dataset.StrictDataset attribute) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) flat_before (mantidimaging.core.data.dataset.StrictDataset attribute) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) FlatField (mantidimaging.gui.windows.nexus_load_dialog.presenter.ImageKeys attribute) FlatFieldFilter (class in mantidimaging.core.operations.flat_fielding.flat_fielding) FLOAT (mantidimaging.gui.utility.qt_helpers.Type attribute) FOCUS_TAB (mantidimaging.gui.windows.main.presenter.Notification attribute) format (mantidimaging.core.utility.data_containers.ImageParameters attribute) free_shared_memory_linux() (in module mantidimaging.core.parallel.manager) from_file() (mantidimaging.core.io.filenames.FilenameGroup class method) from_list() (mantidimaging.core.utility.sensible_roi.SensibleROI static method) from_name() (mantidimaging.core.io.filenames.FilenamePattern class method) from_points() (mantidimaging.core.utility.sensible_roi.SensibleROI static method) from_serialized() (mantidimaging.core.operation_history.operations.ImageOperation static method) full() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method) full_size() (in module mantidimaging.core.utility.size_calculator) full_size_bytes() (in module mantidimaging.core.utility.size_calculator) full_size_KB() (in module mantidimaging.core.utility.size_calculator) full_size_MB() (in module mantidimaging.core.utility.size_calculator) FULL_UPDATE (mantidimaging.gui.dialogs.cor_inspection.presenter.Notification attribute)

G

GaussianFilter (class in mantidimaging.core.operations.gaussian.gaussian) generate() (in module mantidimaging.core.utility.projection_angles) (mantidimaging.core.io.filenames.FilenamePattern method) generate_histogram_from_image() (in module mantidimaging.core.utility.histogram) generate_mi_shared_mem_name() (in module mantidimaging.core.parallel.manager) generate_names() (in module mantidimaging.core.io.saver) get_active_stack_visualisers() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) get_all_180_projections() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.main.view.MainWindowView method) get_all_cors_from_regression() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) get_all_stacks() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.main.view.MainWindowView method) get_allowed_filters() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel static method) get_auto_cor_method() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) get_averaged_image() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) get_candidate_file_extensions() (in module mantidimaging.core.io.utility) get_conda_available_version() (mantidimaging.core.utility.version_check.CheckVersion method) get_conda_installed_label() (mantidimaging.core.utility.version_check.CheckVersion method) get_conda_installed_version() (mantidimaging.core.utility.version_check.CheckVersion method) get_cor_for_slice_from_regression() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) get_cor_from_regression() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) get_cor_table_selected_rows() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) get_csv_filename() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) get_dataset() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.main.view.MainWindowView method) (mantidimaging.gui.windows.nexus_load_dialog.presenter.NexusLoadPresenter method) get_dataset_id_for_stack() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) get_dataset_id_from_stack_uuid() (mantidimaging.gui.windows.main.view.MainWindowView method) get_dataset_tree_view_item() (mantidimaging.gui.windows.main.view.MainWindowView method) get_existing_180_id() (mantidimaging.gui.windows.main.model.MainWindowModel method) get_file_extension() (in module mantidimaging.core.io.utility) get_file_names() (in module mantidimaging.core.io.utility) get_filter_module_name() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) get_image_region() (mantidimaging.gui.widgets.line_profile_plot.view.ImageViewLineROI method) get_image_shape() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) get_images_by_uuid() (mantidimaging.gui.windows.main.model.MainWindowModel method) get_images_from_stack() (mantidimaging.core.operations.base_filter.BaseFilter static method) get_images_from_stack_uuid() (mantidimaging.gui.windows.main.view.MainWindowView method) get_index() (mantidimaging.core.io.filenames.FilenamePattern method) get_loader() (in module mantidimaging.core.io.loader.loader) get_me_a_cor() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) get_memory_usage_linux() (in module mantidimaging.core.utility.memory_usage) get_memory_usage_linux_str() (in module mantidimaging.core.utility.memory_usage) get_nearest_timeline_tick() (mantidimaging.gui.widgets.mi_image_view.presenter.MIImagePresenter static method) get_normalise_stack() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) get_num_images() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) get_number_of_cors() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method)

get_parameter_value() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) get_parameters() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog method) get_parent_dataset() (mantidimaging.gui.windows.main.model.MainWindowModel method) get_pixel_size_from_images() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) get_prefix() (in module mantidimaging.core.io.utility) get_projection_angles() (mantidimaging.core.utility.projection_angle_parser.ProjectionAngleFileParser method) get_recon_group() (mantidimaging.gui.windows.main.view.MainWindowView static method) get_recon_list_id() (mantidimaging.gui.windows.main.model.MainWindowModel method) get_reconstructor_for() (in module mantidimaging.core.reconstruct) get_results() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) get_roi() (mantidimaging.gui.widgets.mi_image_view.presenter.MIImagePresenter static method) (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget method) get_search_range() (in module mantidimaging.core.rotation.polyfit_correlation) get_selected_filter() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) get_show_at_start() (mantidimaging.gui.windows.welcome_screen.view.WelcomeScreenView method) get_sinograms_item() (mantidimaging.gui.windows.main.view.MainWindowView static method) get_slice_indices() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) get_spectrum() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) get_stack() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.main.view.MainWindowView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) get_stack_history() (mantidimaging.gui.windows.main.view.MainWindowView method) get_stack_id_by_name() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) get_stack_spectrum() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel static method) get_stack_visualiser() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.main.view.MainWindowView method) get_stack_visualiser_history() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) get_stack_with_images() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.main.view.MainWindowView method) get_tof_range() (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget method) get_value_from_qwidget() (in module mantidimaging.gui.utility.qt_helpers) get_version() (mantidimaging.core.utility.version_check.CheckVersion method) getColumn() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) goto_angle() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) goto_projection() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) gpu_available() (in module mantidimaging.core.gpu.utility) gradient (mantidimaging.core.rotation.data_model.CorTiltDataModel property) group_name() (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method)

H

h_middle (mantidimaging.core.data.imagestack.ImageStack property) handle_auto_update_preview_selection() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) handle_completion() (mantidimaging.gui.dialogs.async_task.view.AsyncTaskDialogView method) handle_enable_normalised() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) handle_export_csv() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) handle_filter_selection() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) handle_normalise_stack_change() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) handle_range_slide_moved() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) handle_roi_moved() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) handle_sample_change() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) handle_selection() (mantidimaging.gui.widgets.dataset_selector.presenter.DatasetSelectorWidgetPresenter method) handle_stack_change() (mantidimaging.gui.windows.wizard.presenter.WizardPresenter method) (mantidimaging.gui.windows.wizard.view.WizardStage method) (mantidimaging.gui.windows.wizard.view.WizardStep method) handle_stack_changed() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) has_proj180deg() (mantidimaging.core.data.imagestack.ImageStack method) has_results (mantidimaging.core.rotation.data_model.CorTiltDataModel property) (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property)

has_shared_memory (mantidimaging.core.parallel.utility.SharedArray property) have_active_stacks (mantidimaging.gui.windows.main.presenter.MainWindowPresenter property) headerData() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) height (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.utility.sensible_roi.SensibleROI property) hide_difference_overlay() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) hide_negative_overlay() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) hide_step() (mantidimaging.gui.windows.wizard.view.WizardStep method) hide_tilt() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) histogram (mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu.AutoColorMenu property) (mantidimaging.gui.widgets.mi_image_view.view.MIImageView property) (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView property) (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews attribute) histogram_legend (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews property) histogram_region (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView property) history_with_new_ops() (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter method) HistoryPredicate (class in mantidimaging.gui.windows.wizard.model) hoverEnterEvent() (mantidimaging.gui.widgets.indicator_icon.view.IndicatorIconView method) hoverLeaveEvent() (mantidimaging.gui.widgets.indicator_icon.view.IndicatorIconView method)

I

id (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.data.reconlist.ReconList property) (mantidimaging.gui.windows.main.presenter.DatasetId attribute) (mantidimaging.gui.windows.main.presenter.StackId attribute) (mantidimaging.gui.windows.main.view.QTreeDatasetWidgetItem property) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView property) ids (mantidimaging.core.data.reconlist.ReconList property) image (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget attribute) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView property) IMAGE_CLICKED_CURRENT (mantidimaging.gui.dialogs.cor_inspection.presenter.Notification attribute) IMAGE_CLICKED_LESS (mantidimaging.gui.dialogs.cor_inspection.presenter.Notification attribute) IMAGE_CLICKED_MORE (mantidimaging.gui.dialogs.cor_inspection.presenter.Notification attribute) image_data (mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu.AutoColorMenu property) (mantidimaging.gui.widgets.mi_image_view.view.MIImageView property) (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView property) IMAGE_FILE_LOAD (mantidimaging.gui.windows.main.presenter.Notification attribute) IMAGE_FILE_SAVE (mantidimaging.gui.windows.main.presenter.Notification attribute) image_format() (mantidimaging.gui.windows.main.image_save_dialog.ImageSaveDialog method) image_hover_event() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) image_ids (mantidimaging.gui.windows.main.model.MainWindowModel property) image_item (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay property) (mantidimaging.gui.widgets.mi_image_view.view.MIImageView property) (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView property) image_keys (mantidimaging.core.data.dataset.StrictDataset property) image_load_dialog (mantidimaging.gui.windows.main.view.MainWindowView attribute) image_save() (in module mantidimaging.core.io.saver) image_save_dialog (mantidimaging.gui.windows.main.view.MainWindowView attribute) IMAGE_TYPE_IMAGE_COUNTER (mantidimaging.core.utility.imat_log_file_parser.IMATLogColumn attribute) image_view (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView attribute) imageItem (mantidimaging.gui.widgets.mi_image_view.view.MIImageView attribute) ImageKeys (class in mantidimaging.gui.windows.nexus_load_dialog.presenter) imageLayout (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView attribute) ImageLoadDialog (class in mantidimaging.gui.windows.image_load_dialog.view) ImageLoader (class in mantidimaging.core.io.loader.img_loader) ImageOperation (class in mantidimaging.core.operation_history.operations) ImageParameters (class in mantidimaging.core.utility.data_containers) images (mantidimaging.gui.windows.main.model.MainWindowModel property) (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property)

images_are_sinograms (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog attribute) ImageSaveDialog (class in mantidimaging.gui.windows.main.image_save_dialog) ImageStack (class in mantidimaging.core.data.imagestack) ImageType (class in mantidimaging.gui.dialogs.cor_inspection.types) ImageViewLineROI (class in mantidimaging.gui.widgets.line_profile_plot.view) IMATLogColumn (class in mantidimaging.core.utility.imat_log_file_parser) IMATLogFile (class in mantidimaging.core.utility.imat_log_file_parser) import_self() (mantidimaging.core.tools.abstract_tool.AbstractTool method) (mantidimaging.core.tools.tomopy_tool.TomoPyTool method) indicator (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataCheck attribute) IndicatorIconView (class in mantidimaging.gui.widgets.indicator_icon.view) Indices (class in mantidimaging.core.utility.data_containers) indices (mantidimaging.core.utility.data_containers.ImageParameters attribute) (mantidimaging.gui.windows.image_load_dialog.field.Field property) init_crop_coords() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) init_histogram() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) initial_select_data() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) initialise_logging() (in module mantidimaging.helper) inplace1() (in module mantidimaging.core.parallel.shared) inplace2() (in module mantidimaging.core.parallel.shared) inplace3() (in module mantidimaging.core.parallel.shared) inplace_second_2d() (in module mantidimaging.core.parallel.shared) input_path (mantidimaging.core.utility.data_containers.ImageParameters attribute) inputTab (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) insertRows() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) instructionStackedWidget (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute) INT (mantidimaging.gui.utility.qt_helpers.Type attribute) invertDifference (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) is_a_proj180deg() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) is_auto_update_preview() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) is_completed() (mantidimaging.core.utility.progress_reporting.progress.Progress method) is_conda_uptodate() (mantidimaging.core.utility.version_check.CheckVersion method) is_current_stack() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) is_sinograms (mantidimaging.core.data.imagestack.ImageStack property) is_started() (mantidimaging.core.utility.progress_reporting.progress.Progress method) ItemInfo (class in mantidimaging.core.utility.leak_tracker) iter_points() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) iterations() (mantidimaging.gui.dialogs.cor_inspection.model.CORInspectionDialogModel method)

K

KernelSpinBox (class in mantidimaging.core.operations.median_filter.median_filter)

keyPressEvent() (mantidimaging.gui.widgets.removable_row_table_view.RemovableRowTableView method)

L

LABEL (mantidimaging.gui.utility.qt_helpers.Type attribute) last_cor (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) last_result (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) last_status_message() (mantidimaging.core.utility.progress_reporting.progress.Progress method) lbhc_a0 (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) lbhc_a1 (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) lbhc_a2 (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) lbhc_a3 (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) lbhc_enabled (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) LeakTracker (class in mantidimaging.core.utility.leak_tracker) left (mantidimaging.core.utility.sensible_roi.SensibleROI attribute) LESS (mantidimaging.gui.dialogs.cor_inspection.types.ImageType attribute) lessButton (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute) linear_regression() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) LineProfilePlot (class in mantidimaging.gui.widgets.line_profile_plot.view) link_all_views() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) link_before_after_histogram_scales() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) link_histograms (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter attribute) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter attribute) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter attribute) (mantidimaging.core.operations.divide.divide.DivideFilter attribute) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter attribute) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter attribute) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation attribute) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter attribute) (mantidimaging.core.operations.outliers.outliers.OutliersFilter attribute) (mantidimaging.core.operations.rebin.rebin.RebinFilter attribute) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter attribute) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter attribute) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter attribute) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter attribute) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter attribute) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter attribute) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter attribute) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter attribute) link_histograms() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method)

link_images_changed() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) link_sibling_axis() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) link_sibling_histogram() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) linkImages (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) LIST (mantidimaging.gui.utility.qt_helpers.Type attribute) live_objects() (mantidimaging.core.utility.leak_tracker.LeakTracker method) load() (in module mantidimaging.core.io.loader.loader) load_180_deg_dialog() (mantidimaging.gui.windows.main.view.MainWindowView method) load_allowed_recon_kwargs() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel static method) LOAD_ERROR_STRING (mantidimaging.gui.windows.main.presenter.MainWindowPresenter attribute) load_files() (mantidimaging.core.io.loader.img_loader.ImageLoader method) load_filter_packages() (in module mantidimaging.core.operations.loader) load_image_files() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) load_image_stack() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.main.view.MainWindowView method) load_images() (mantidimaging.gui.windows.main.model.MainWindowModel method) load_log() (in module mantidimaging.core.io.loader.loader) load_metadata() (mantidimaging.core.data.imagestack.ImageStack method) load_nexus_file() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) load_p() (in module mantidimaging.core.io.loader.loader) load_projection_angles() (mantidimaging.gui.windows.main.view.MainWindowView method) LOAD_PROJECTION_ANGLES_DIALOG_MESSAGE (mantidimaging.gui.windows.main.view.MainWindowView attribute) LOAD_PROJECTION_ANGLES_FILE_DIALOG_CAPTION (mantidimaging.gui.windows.main.view.MainWindowView attribute) load_sample_data() (mantidimaging.core.io.loader.img_loader.ImageLoader method) load_sample_log_dialog() (mantidimaging.gui.windows.main.view.MainWindowView method) load_stack() (in module mantidimaging.core.io.loader.loader) load_stacks_from_folder() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) LOADED (mantidimaging.gui.dialogs.cor_inspection.presenter.Notification attribute) LoadedPredicate (class in mantidimaging.gui.windows.wizard.model) LoadingParameters (class in mantidimaging.core.utility.data_containers) LoadPresenter (class in mantidimaging.gui.windows.image_load_dialog.presenter) lock_scale_changed() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) lock_zoom_changed() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) lockHistograms (mantidimaging.gui.windows.stack_choice.view.StackChoiceView attribute) lockScaleCheckBox (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) lockZoomCheckBox (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) log_file (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.utility.data_containers.ImageParameters attribute)

M

main() (in module mantidimaging.ipython) (in module mantidimaging.main) main_window (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter attribute) (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView attribute) (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter property) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView property) MainWindowModel (class in mantidimaging.gui.windows.main.model) MainWindowPresenter (class in mantidimaging.gui.windows.main.presenter) MainWindowView (class in mantidimaging.gui.windows.main.view) make_dirs_if_needed() (in module mantidimaging.core.io.saver) make_name_unique() (mantidimaging.core.data.imagestack.ImageStack method) mantidimaging module mantidimaging.core module mantidimaging.core.data module mantidimaging.core.data.dataset module mantidimaging.core.data.imagestack module mantidimaging.core.data.reconlist module mantidimaging.core.data.utility module mantidimaging.core.gpu module mantidimaging.core.gpu.utility module mantidimaging.core.io module mantidimaging.core.io.csv_output module mantidimaging.core.io.filenames module mantidimaging.core.io.loader module mantidimaging.core.io.loader.img_loader module mantidimaging.core.io.loader.loader module mantidimaging.core.io.saver module mantidimaging.core.io.utility module mantidimaging.core.net module mantidimaging.core.net.help_pages module mantidimaging.core.operation_history module mantidimaging.core.operation_history.const module mantidimaging.core.operation_history.operations module mantidimaging.core.operations module mantidimaging.core.operations.arithmetic module mantidimaging.core.operations.arithmetic.arithmetic module mantidimaging.core.operations.base_filter module mantidimaging.core.operations.circular_mask module mantidimaging.core.operations.circular_mask.circular_mask module mantidimaging.core.operations.clip_values module mantidimaging.core.operations.clip_values.clip_values module mantidimaging.core.operations.crop_coords module mantidimaging.core.operations.crop_coords.crop_coords module mantidimaging.core.operations.divide module mantidimaging.core.operations.divide.divide module mantidimaging.core.operations.flat_fielding module mantidimaging.core.operations.flat_fielding.flat_fielding module mantidimaging.core.operations.gaussian module mantidimaging.core.operations.gaussian.gaussian module mantidimaging.core.operations.loader module mantidimaging.core.operations.median_filter module mantidimaging.core.operations.median_filter.median_filter module mantidimaging.core.operations.monitor_normalisation module mantidimaging.core.operations.monitor_normalisation.monitor_normalisation module mantidimaging.core.operations.nan_removal module mantidimaging.core.operations.nan_removal.nan_removal module mantidimaging.core.operations.outliers module mantidimaging.core.operations.outliers.outliers module mantidimaging.core.operations.rebin module mantidimaging.core.operations.rebin.rebin module mantidimaging.core.operations.remove_all_stripe module mantidimaging.core.operations.remove_all_stripe.remove_all_stripe module mantidimaging.core.operations.remove_dead_stripe module mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe module mantidimaging.core.operations.remove_large_stripe module mantidimaging.core.operations.remove_large_stripe.remove_large_stripe module mantidimaging.core.operations.remove_stripe_filtering module mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering module mantidimaging.core.operations.remove_stripe_sorting_fitting module mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting module mantidimaging.core.operations.rescale module mantidimaging.core.operations.rescale.rescale module mantidimaging.core.operations.rescale.rescale_test module mantidimaging.core.operations.ring_removal module mantidimaging.core.operations.ring_removal.ring_removal module mantidimaging.core.operations.roi_normalisation module mantidimaging.core.operations.roi_normalisation.roi_normalisation module mantidimaging.core.operations.rotate_stack module mantidimaging.core.operations.rotate_stack.rotate_stack module mantidimaging.core.parallel module mantidimaging.core.parallel.manager module mantidimaging.core.parallel.shared module mantidimaging.core.parallel.utility module mantidimaging.core.reconstruct module mantidimaging.core.reconstruct.astra_recon module mantidimaging.core.reconstruct.base_recon module mantidimaging.core.reconstruct.cil_recon module mantidimaging.core.reconstruct.tomopy_recon module mantidimaging.core.rotation module mantidimaging.core.rotation.data_model module mantidimaging.core.rotation.polyfit_correlation module mantidimaging.core.tools module mantidimaging.core.tools.abstract_tool module mantidimaging.core.tools.importer module mantidimaging.core.tools.tomopy_tool module mantidimaging.core.utility module mantidimaging.core.utility.close_enough_point module mantidimaging.core.utility.command_line_arguments module mantidimaging.core.utility.cor_interpolate module mantidimaging.core.utility.cuda_check module mantidimaging.core.utility.data_containers module mantidimaging.core.utility.execution_timer module mantidimaging.core.utility.finder module mantidimaging.core.utility.func_call module mantidimaging.core.utility.histogram module mantidimaging.core.utility.histogram_test module mantidimaging.core.utility.imat_log_file_parser module mantidimaging.core.utility.leak_tracker module mantidimaging.core.utility.memory_usage module mantidimaging.core.utility.optional_imports module mantidimaging.core.utility.progress_reporting module mantidimaging.core.utility.progress_reporting.console_progress_bar module mantidimaging.core.utility.progress_reporting.progress module mantidimaging.core.utility.projection_angle_parser module mantidimaging.core.utility.projection_angles module mantidimaging.core.utility.sensible_roi module mantidimaging.core.utility.size_calculator module mantidimaging.core.utility.version_check module mantidimaging.gui module mantidimaging.gui.dialogs module mantidimaging.gui.dialogs.async_task module mantidimaging.gui.dialogs.async_task.model module mantidimaging.gui.dialogs.async_task.presenter module mantidimaging.gui.dialogs.async_task.task module mantidimaging.gui.dialogs.async_task.view module mantidimaging.gui.dialogs.cor_inspection module mantidimaging.gui.dialogs.cor_inspection.model module mantidimaging.gui.dialogs.cor_inspection.presenter module mantidimaging.gui.dialogs.cor_inspection.recon_slice_view module mantidimaging.gui.dialogs.cor_inspection.types module mantidimaging.gui.dialogs.cor_inspection.view module mantidimaging.gui.dialogs.multiple_stack_select module mantidimaging.gui.dialogs.multiple_stack_select.view module mantidimaging.gui.dialogs.op_history_copy module mantidimaging.gui.dialogs.op_history_copy.model module mantidimaging.gui.dialogs.op_history_copy.presenter module mantidimaging.gui.dialogs.op_history_copy.view module mantidimaging.gui.gui module mantidimaging.gui.mvp_base module mantidimaging.gui.mvp_base.presenter module mantidimaging.gui.mvp_base.view module mantidimaging.gui.utility module mantidimaging.gui.utility.common module mantidimaging.gui.utility.qt_helpers module mantidimaging.gui.widgets module mantidimaging.gui.widgets.auto_colour_menu module mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu module mantidimaging.gui.widgets.bad_data_overlay module mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay module mantidimaging.gui.widgets.dataset_selector module mantidimaging.gui.widgets.dataset_selector.presenter module mantidimaging.gui.widgets.dataset_selector.view module mantidimaging.gui.widgets.dataset_selector_dialog module mantidimaging.gui.widgets.dataset_selector_dialog.dataset_selector_dialog module mantidimaging.gui.widgets.indicator_icon module mantidimaging.gui.widgets.indicator_icon.view module mantidimaging.gui.widgets.line_profile_plot module mantidimaging.gui.widgets.line_profile_plot.view module mantidimaging.gui.widgets.mi_image_view module mantidimaging.gui.widgets.mi_image_view.presenter module mantidimaging.gui.widgets.mi_image_view.view module mantidimaging.gui.widgets.mi_mini_image_view module mantidimaging.gui.widgets.mi_mini_image_view.view module mantidimaging.gui.widgets.palette_changer module mantidimaging.gui.widgets.palette_changer.presenter module mantidimaging.gui.widgets.palette_changer.view module mantidimaging.gui.widgets.removable_row_table_view module mantidimaging.gui.windows module mantidimaging.gui.windows.image_load_dialog module mantidimaging.gui.windows.image_load_dialog.field module mantidimaging.gui.windows.image_load_dialog.presenter module mantidimaging.gui.windows.image_load_dialog.view module mantidimaging.gui.windows.main module mantidimaging.gui.windows.main.image_save_dialog module mantidimaging.gui.windows.main.model module mantidimaging.gui.windows.main.nexus_save_dialog module mantidimaging.gui.windows.main.presenter module mantidimaging.gui.windows.main.view module mantidimaging.gui.windows.nexus_load_dialog module mantidimaging.gui.windows.nexus_load_dialog.presenter module

mantidimaging.gui.windows.nexus_load_dialog.view module mantidimaging.gui.windows.operations module mantidimaging.gui.windows.operations.filter_previews module mantidimaging.gui.windows.operations.model module mantidimaging.gui.windows.operations.presenter module mantidimaging.gui.windows.operations.view module mantidimaging.gui.windows.recon module mantidimaging.gui.windows.recon.image_view module mantidimaging.gui.windows.recon.model module mantidimaging.gui.windows.recon.point_table_model module mantidimaging.gui.windows.recon.presenter module mantidimaging.gui.windows.recon.view module mantidimaging.gui.windows.spectrum_viewer module mantidimaging.gui.windows.spectrum_viewer.model module mantidimaging.gui.windows.spectrum_viewer.presenter module mantidimaging.gui.windows.spectrum_viewer.spectrum_widget module mantidimaging.gui.windows.spectrum_viewer.view module mantidimaging.gui.windows.stack_choice module mantidimaging.gui.windows.stack_choice.compare_presenter module mantidimaging.gui.windows.stack_choice.presenter module mantidimaging.gui.windows.stack_choice.presenter_base module mantidimaging.gui.windows.stack_choice.tests module mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test module mantidimaging.gui.windows.stack_choice.tests.presenter_test module mantidimaging.gui.windows.stack_choice.tests.view_test module mantidimaging.gui.windows.stack_choice.view module mantidimaging.gui.windows.stack_visualiser module mantidimaging.gui.windows.stack_visualiser.metadata_dialog module mantidimaging.gui.windows.stack_visualiser.model module mantidimaging.gui.windows.stack_visualiser.presenter module mantidimaging.gui.windows.stack_visualiser.view module mantidimaging.gui.windows.welcome_screen module mantidimaging.gui.windows.welcome_screen.presenter module mantidimaging.gui.windows.welcome_screen.tests module mantidimaging.gui.windows.welcome_screen.tests.presenter_test module mantidimaging.gui.windows.welcome_screen.tests.view_test module mantidimaging.gui.windows.welcome_screen.view module mantidimaging.gui.windows.wizard module mantidimaging.gui.windows.wizard.model module mantidimaging.gui.windows.wizard.presenter module mantidimaging.gui.windows.wizard.view module mantidimaging.helper module mantidimaging.ipython module mantidimaging.main module mark_as_sinograms() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) mark_best_recon() (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView method) mark_complete() (mantidimaging.core.utility.progress_reporting.progress.Progress method) mark_cropped() (in module mantidimaging.core.data.utility) match() (mantidimaging.core.io.filenames.FilenamePattern method) match_metadata() (mantidimaging.core.io.filenames.FilenamePattern method) max_preview_image_idx (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter property) max_proj_angle (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) max_projection_angle (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) maxProjAngle (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) median_filter() (mantidimaging.core.gpu.utility.CudaExecuter method) MedianFilter (class in mantidimaging.core.operations.median_filter.median_filter) menuFile (mantidimaging.gui.windows.main.view.MainWindowView attribute) menuHelp (mantidimaging.gui.windows.main.view.MainWindowView attribute) menuImage (mantidimaging.gui.windows.main.view.MainWindowView attribute) menuWorkflow (mantidimaging.gui.windows.main.view.MainWindowView attribute) messageIcon (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) MetadataDialog (class in mantidimaging.gui.windows.stack_visualiser.metadata_dialog) Micron (class in mantidimaging.core.utility.data_containers) MIImagePresenter (class in mantidimaging.gui.widgets.mi_image_view.presenter) MIImageView (class in mantidimaging.gui.widgets.mi_image_view.view) MIMiniImageView (class in mantidimaging.gui.widgets.mi_mini_image_view.view) MINIMISATION_SQUARE_SUM (mantidimaging.gui.windows.recon.presenter.AutoCorMethod attribute) minimiseBtn (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) MixedDataset (class in mantidimaging.core.data.dataset) mode (mantidimaging.gui.windows.image_load_dialog.presenter.TypeInfo attribute) model (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter attribute) model_changed (mantidimaging.gui.windows.main.view.MainWindowView attribute) MODES (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter attribute) modes() (in module mantidimaging.core.operations.gaussian.gaussian) (in module mantidimaging.core.operations.median_filter.median_filter) (in module mantidimaging.core.operations.outliers.outliers) (in module mantidimaging.core.operations.rebin.rebin) (in module mantidimaging.core.operations.roi_normalisation.roi_normalisation) module mantidimaging mantidimaging.core mantidimaging.core.data mantidimaging.core.data.dataset mantidimaging.core.data.imagestack mantidimaging.core.data.reconlist mantidimaging.core.data.utility mantidimaging.core.gpu mantidimaging.core.gpu.utility mantidimaging.core.io mantidimaging.core.io.csv_output mantidimaging.core.io.filenames mantidimaging.core.io.loader mantidimaging.core.io.loader.img_loader mantidimaging.core.io.loader.loader mantidimaging.core.io.saver mantidimaging.core.io.utility mantidimaging.core.net mantidimaging.core.net.help_pages mantidimaging.core.operation_history mantidimaging.core.operation_history.const mantidimaging.core.operation_history.operations mantidimaging.core.operations mantidimaging.core.operations.arithmetic mantidimaging.core.operations.arithmetic.arithmetic mantidimaging.core.operations.base_filter mantidimaging.core.operations.circular_mask mantidimaging.core.operations.circular_mask.circular_mask mantidimaging.core.operations.clip_values mantidimaging.core.operations.clip_values.clip_values mantidimaging.core.operations.crop_coords mantidimaging.core.operations.crop_coords.crop_coords mantidimaging.core.operations.divide mantidimaging.core.operations.divide.divide mantidimaging.core.operations.flat_fielding mantidimaging.core.operations.flat_fielding.flat_fielding mantidimaging.core.operations.gaussian mantidimaging.core.operations.gaussian.gaussian mantidimaging.core.operations.loader mantidimaging.core.operations.median_filter mantidimaging.core.operations.median_filter.median_filter mantidimaging.core.operations.monitor_normalisation mantidimaging.core.operations.monitor_normalisation.monitor_normalisation mantidimaging.core.operations.nan_removal mantidimaging.core.operations.nan_removal.nan_removal mantidimaging.core.operations.outliers mantidimaging.core.operations.outliers.outliers mantidimaging.core.operations.rebin mantidimaging.core.operations.rebin.rebin mantidimaging.core.operations.remove_all_stripe mantidimaging.core.operations.remove_all_stripe.remove_all_stripe mantidimaging.core.operations.remove_dead_stripe mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe mantidimaging.core.operations.remove_large_stripe mantidimaging.core.operations.remove_large_stripe.remove_large_stripe mantidimaging.core.operations.remove_stripe_filtering mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering mantidimaging.core.operations.remove_stripe_sorting_fitting mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting mantidimaging.core.operations.rescale mantidimaging.core.operations.rescale.rescale mantidimaging.core.operations.rescale.rescale_test mantidimaging.core.operations.ring_removal mantidimaging.core.operations.ring_removal.ring_removal mantidimaging.core.operations.roi_normalisation mantidimaging.core.operations.roi_normalisation.roi_normalisation mantidimaging.core.operations.rotate_stack mantidimaging.core.operations.rotate_stack.rotate_stack mantidimaging.core.parallel mantidimaging.core.parallel.manager mantidimaging.core.parallel.shared mantidimaging.core.parallel.utility mantidimaging.core.reconstruct mantidimaging.core.reconstruct.astra_recon mantidimaging.core.reconstruct.base_recon mantidimaging.core.reconstruct.cil_recon mantidimaging.core.reconstruct.tomopy_recon mantidimaging.core.rotation mantidimaging.core.rotation.data_model mantidimaging.core.rotation.polyfit_correlation mantidimaging.core.tools mantidimaging.core.tools.abstract_tool mantidimaging.core.tools.importer mantidimaging.core.tools.tomopy_tool mantidimaging.core.utility mantidimaging.core.utility.close_enough_point mantidimaging.core.utility.command_line_arguments mantidimaging.core.utility.cor_interpolate mantidimaging.core.utility.cuda_check mantidimaging.core.utility.data_containers mantidimaging.core.utility.execution_timer mantidimaging.core.utility.finder mantidimaging.core.utility.func_call mantidimaging.core.utility.histogram mantidimaging.core.utility.histogram_test mantidimaging.core.utility.imat_log_file_parser mantidimaging.core.utility.leak_tracker mantidimaging.core.utility.memory_usage mantidimaging.core.utility.optional_imports mantidimaging.core.utility.progress_reporting mantidimaging.core.utility.progress_reporting.console_progress_bar mantidimaging.core.utility.progress_reporting.progress mantidimaging.core.utility.projection_angle_parser mantidimaging.core.utility.projection_angles mantidimaging.core.utility.sensible_roi mantidimaging.core.utility.size_calculator mantidimaging.core.utility.version_check mantidimaging.gui mantidimaging.gui.dialogs mantidimaging.gui.dialogs.async_task mantidimaging.gui.dialogs.async_task.model mantidimaging.gui.dialogs.async_task.presenter mantidimaging.gui.dialogs.async_task.task mantidimaging.gui.dialogs.async_task.view mantidimaging.gui.dialogs.cor_inspection mantidimaging.gui.dialogs.cor_inspection.model mantidimaging.gui.dialogs.cor_inspection.presenter mantidimaging.gui.dialogs.cor_inspection.recon_slice_view mantidimaging.gui.dialogs.cor_inspection.types mantidimaging.gui.dialogs.cor_inspection.view mantidimaging.gui.dialogs.multiple_stack_select mantidimaging.gui.dialogs.multiple_stack_select.view mantidimaging.gui.dialogs.op_history_copy mantidimaging.gui.dialogs.op_history_copy.model mantidimaging.gui.dialogs.op_history_copy.presenter mantidimaging.gui.dialogs.op_history_copy.view mantidimaging.gui.gui mantidimaging.gui.mvp_base mantidimaging.gui.mvp_base.presenter mantidimaging.gui.mvp_base.view mantidimaging.gui.utility mantidimaging.gui.utility.common mantidimaging.gui.utility.qt_helpers mantidimaging.gui.widgets mantidimaging.gui.widgets.auto_colour_menu mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu mantidimaging.gui.widgets.bad_data_overlay mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay mantidimaging.gui.widgets.dataset_selector mantidimaging.gui.widgets.dataset_selector.presenter mantidimaging.gui.widgets.dataset_selector.view mantidimaging.gui.widgets.dataset_selector_dialog mantidimaging.gui.widgets.dataset_selector_dialog.dataset_selector_dialog mantidimaging.gui.widgets.indicator_icon mantidimaging.gui.widgets.indicator_icon.view mantidimaging.gui.widgets.line_profile_plot mantidimaging.gui.widgets.line_profile_plot.view mantidimaging.gui.widgets.mi_image_view mantidimaging.gui.widgets.mi_image_view.presenter mantidimaging.gui.widgets.mi_image_view.view mantidimaging.gui.widgets.mi_mini_image_view mantidimaging.gui.widgets.mi_mini_image_view.view mantidimaging.gui.widgets.palette_changer mantidimaging.gui.widgets.palette_changer.presenter mantidimaging.gui.widgets.palette_changer.view mantidimaging.gui.widgets.removable_row_table_view mantidimaging.gui.windows mantidimaging.gui.windows.image_load_dialog mantidimaging.gui.windows.image_load_dialog.field mantidimaging.gui.windows.image_load_dialog.presenter mantidimaging.gui.windows.image_load_dialog.view mantidimaging.gui.windows.main mantidimaging.gui.windows.main.image_save_dialog mantidimaging.gui.windows.main.model mantidimaging.gui.windows.main.nexus_save_dialog mantidimaging.gui.windows.main.presenter mantidimaging.gui.windows.main.view mantidimaging.gui.windows.nexus_load_dialog mantidimaging.gui.windows.nexus_load_dialog.presenter mantidimaging.gui.windows.nexus_load_dialog.view mantidimaging.gui.windows.operations mantidimaging.gui.windows.operations.filter_previews mantidimaging.gui.windows.operations.model mantidimaging.gui.windows.operations.presenter mantidimaging.gui.windows.operations.view mantidimaging.gui.windows.recon mantidimaging.gui.windows.recon.image_view mantidimaging.gui.windows.recon.model mantidimaging.gui.windows.recon.point_table_model mantidimaging.gui.windows.recon.presenter mantidimaging.gui.windows.recon.view mantidimaging.gui.windows.spectrum_viewer mantidimaging.gui.windows.spectrum_viewer.model mantidimaging.gui.windows.spectrum_viewer.presenter mantidimaging.gui.windows.spectrum_viewer.spectrum_widget mantidimaging.gui.windows.spectrum_viewer.view mantidimaging.gui.windows.stack_choice mantidimaging.gui.windows.stack_choice.compare_presenter mantidimaging.gui.windows.stack_choice.presenter mantidimaging.gui.windows.stack_choice.presenter_base mantidimaging.gui.windows.stack_choice.tests mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test mantidimaging.gui.windows.stack_choice.tests.presenter_test mantidimaging.gui.windows.stack_choice.tests.view_test mantidimaging.gui.windows.stack_choice.view mantidimaging.gui.windows.stack_visualiser mantidimaging.gui.windows.stack_visualiser.metadata_dialog mantidimaging.gui.windows.stack_visualiser.model mantidimaging.gui.windows.stack_visualiser.presenter mantidimaging.gui.windows.stack_visualiser.view mantidimaging.gui.windows.welcome_screen mantidimaging.gui.windows.welcome_screen.presenter mantidimaging.gui.windows.welcome_screen.tests mantidimaging.gui.windows.welcome_screen.tests.presenter_test mantidimaging.gui.windows.welcome_screen.tests.view_test mantidimaging.gui.windows.welcome_screen.view mantidimaging.gui.windows.wizard mantidimaging.gui.windows.wizard.model mantidimaging.gui.windows.wizard.presenter mantidimaging.gui.windows.wizard.view mantidimaging.helper mantidimaging.ipython mantidimaging.main MonitorNormalisation (class in mantidimaging.core.operations.monitor_normalisation.monitor_normalisation) MORE (mantidimaging.gui.dialogs.cor_inspection.types.ImageType attribute) moreButton (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute) mouse_click() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) mouse_over() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) mouseClickEvent() (mantidimaging.gui.widgets.indicator_icon.view.IndicatorIconView method) mousePressEvent() (mantidimaging.gui.windows.operations.filter_previews.ZSlider method) msg (mantidimaging.core.utility.leak_tracker.ItemInfo attribute) (mantidimaging.core.utility.progress_reporting.progress.ProgressHistory attribute) MultipleStackSelect (class in mantidimaging.gui.dialogs.multiple_stack_select.view) multiprocessing_necessary() (in module mantidimaging.core.parallel.utility)

N

name (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.imagestack.ImageStack attribute) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) (mantidimaging.gui.windows.image_load_dialog.presenter.TypeInfo attribute) (mantidimaging.gui.windows.main.presenter.DatasetId attribute) (mantidimaging.gui.windows.main.presenter.StackId attribute) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView property) name_prefix() (mantidimaging.gui.windows.main.image_save_dialog.ImageSaveDialog method) NaNRemovalFilter (class in mantidimaging.core.operations.nan_removal.nan_removal) negative_log() (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) newDataButton (mantidimaging.gui.windows.stack_choice.view.StackChoiceView attribute) nexus_arrays (mantidimaging.core.data.dataset.StrictDataset property) NEXUS_FILE_SELECTED (mantidimaging.gui.windows.nexus_load_dialog.presenter.Notification attribute) NEXUS_LOAD (mantidimaging.gui.windows.main.presenter.Notification attribute) nexus_load_dialog (mantidimaging.gui.windows.main.view.MainWindowView attribute) nexus_rotation_angles (mantidimaging.core.data.dataset.StrictDataset property) NEXUS_SAVE (mantidimaging.gui.windows.main.presenter.Notification attribute) nexus_save() (in module mantidimaging.core.io.saver) nexus_save_dialog (mantidimaging.gui.windows.main.view.MainWindowView attribute) NexusLoadDialog (class in mantidimaging.gui.windows.nexus_load_dialog.view) NexusLoadPresenter (class in mantidimaging.gui.windows.nexus_load_dialog.presenter) NexusSaveDialog (class in mantidimaging.gui.windows.main.nexus_save_dialog) NoGroup (mantidimaging.core.operations.base_filter.FilterGroup attribute) non_negative (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) NONETYPE (mantidimaging.gui.utility.qt_helpers.Type attribute) nonNegativeCheckBox (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) NORMAL (mantidimaging.gui.windows.stack_visualiser.presenter.SVImageMode attribute) normalise_error_issue (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView attribute) normalise_issue() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) normaliseCheckBox (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView attribute) normaliseErrorIcon (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView attribute) normaliseStackSelector (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView attribute) not_found_message() (in module mantidimaging.core.utility.cuda_check)

NOT_THE_LATEST_VERSION (mantidimaging.gui.windows.main.view.MainWindowView attribute) Notification (class in mantidimaging.gui.dialogs.async_task.presenter) (class in mantidimaging.gui.dialogs.cor_inspection.presenter) (class in mantidimaging.gui.widgets.dataset_selector.presenter) (class in mantidimaging.gui.windows.main.presenter) (class in mantidimaging.gui.windows.nexus_load_dialog.presenter) (class in mantidimaging.gui.windows.operations.presenter) (class in mantidimaging.gui.windows.stack_choice.view) notification_icon (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) notification_text (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) Notifications (class in mantidimaging.gui.windows.recon.presenter) notify() (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter method) (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter method) (mantidimaging.gui.mvp_base.presenter.BasePresenter method) (mantidimaging.gui.widgets.dataset_selector.presenter.DatasetSelectorWidgetPresenter method) (mantidimaging.gui.widgets.palette_changer.presenter.PaletteChangerPresenter method) (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) (mantidimaging.gui.windows.nexus_load_dialog.presenter.NexusLoadPresenter method) (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) (mantidimaging.gui.windows.stack_choice.compare_presenter.StackComparePresenter method) (mantidimaging.gui.windows.stack_choice.presenter.StackChoicePresenter method) (mantidimaging.gui.windows.stack_choice.presenter_base.StackChoicePresenterMixin method) (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) num_images (mantidimaging.core.data.imagestack.ImageStack property) num_iter (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) num_materials (mantidimaging.gui.widgets.palette_changer.view.PaletteChangerView property) num_points (mantidimaging.core.rotation.data_model.CorTiltDataModel property) (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) num_projections (mantidimaging.core.data.imagestack.ImageStack property) num_sinograms (mantidimaging.core.data.imagestack.ImageStack property) number_of_images_from_indices() (in module mantidimaging.core.utility.size_calculator) numIter (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) numMaterialsSpinBox (mantidimaging.gui.widgets.palette_changer.view.PaletteChangerView attribute)

O

obj_to_string() (in module mantidimaging.core.utility.leak_tracker) on_auto_update_triggered() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) on_change_and_disable() (in module mantidimaging.gui.utility.qt_helpers) on_change_colour_palette() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) on_load() (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter method) on_ok_clicked() (mantidimaging.gui.widgets.dataset_selector_dialog.dataset_selector_dialog.DatasetSelectorDialog method) on_select_image() (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter method) on_table_row_count_change() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) OPEN (mantidimaging.gui.windows.spectrum_viewer.model.SpecType attribute) open_help_webpage() (in module mantidimaging.core.net.help_pages) (mantidimaging.gui.windows.operations.view.FiltersWindowView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) open_online_documentation() (mantidimaging.gui.windows.main.view.MainWindowView static method) open_user_operation_docs() (in module mantidimaging.core.net.help_pages) operate_on_sinograms (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter attribute) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter attribute) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter attribute) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter attribute) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter attribute)

operation() (mantidimaging.core.utility.command_line_arguments.CommandLineArguments class method) operation_in_progress() (in module mantidimaging.gui.utility.common) OperationModule (class in mantidimaging.core.operations.loader) operations (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter attribute) operationsContainer (mantidimaging.gui.dialogs.op_history_copy.view.OpHistoryCopyDialogView attribute) OpHistoryCopyDialogModel (class in mantidimaging.gui.dialogs.op_history_copy.model) OpHistoryCopyDialogPresenter (class in mantidimaging.gui.dialogs.op_history_copy.presenter) OpHistoryCopyDialogView (class in mantidimaging.gui.dialogs.op_history_copy.view) ops_to_partials() (in module mantidimaging.core.operation_history.operations) optimal_iterations (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter property) (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView property) optimal_rotation_centre (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter property) (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView property) originalDataButton (mantidimaging.gui.windows.stack_choice.view.StackChoiceView attribute) other_histograms (mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu.AutoColorMenu property) (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView property) OutliersFilter (class in mantidimaging.core.operations.outliers.outliers) overlayDifference (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) overwrite() (mantidimaging.gui.windows.main.image_save_dialog.ImageSaveDialog method)

P

pairwise() (in module mantidimaging.gui.widgets.mi_mini_image_view.view) PaletteChangerPresenter (class in mantidimaging.gui.widgets.palette_changer.presenter) PaletteChangerView (class in mantidimaging.gui.widgets.palette_changer.view) params_needed_from_stack (mantidimaging.gui.windows.operations.model.FiltersWindowModel property) parse() (mantidimaging.core.utility.imat_log_file_parser.CSVLogParser method) (mantidimaging.core.utility.imat_log_file_parser.TextLogParser method) parse_args() (in module mantidimaging.main) path (mantidimaging.gui.windows.image_load_dialog.field.Field property) path() (mantidimaging.core.utility.command_line_arguments.CommandLineArguments class method) path_text() (mantidimaging.gui.windows.image_load_dialog.field.Field method) PATTERN (mantidimaging.core.io.filenames.FilenamePattern attribute) PATTERN_d (mantidimaging.core.io.filenames.FilenamePattern attribute) PATTERN_p (mantidimaging.core.io.filenames.FilenamePattern attribute) PATTERN_s (mantidimaging.core.io.filenames.FilenamePattern attribute) pixel_bit_depth (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog attribute) pixel_depth() (mantidimaging.gui.windows.main.image_save_dialog.ImageSaveDialog method) pixel_size (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) pixelDepthComboBox (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) pixelSize (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) pixelSizeSpinBox (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) Point (class in mantidimaging.core.rotation.data_model) point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) populate() (mantidimaging.gui.windows.wizard.presenter.WizardPresenter method) populate_image_menu() (mantidimaging.gui.windows.main.view.MainWindowView method) populate_menu() (in module mantidimaging.gui.utility.qt_helpers) populate_slice_indices() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) position_icon() (mantidimaging.gui.widgets.indicator_icon.view.IndicatorIconView method) prefix (mantidimaging.core.utility.data_containers.ImageParameters attribute) prepare_sinogram() (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) presenter (mantidimaging.gui.dialogs.async_task.view.AsyncTaskDialogView property) (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel attribute) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView attribute)

pretty_print() (mantidimaging.core.utility.leak_tracker.LeakTracker method) preview_image_after (mantidimaging.gui.windows.operations.view.FiltersWindowView property) preview_image_before (mantidimaging.gui.windows.operations.view.FiltersWindowView property) preview_image_difference (mantidimaging.gui.windows.operations.view.FiltersWindowView property) preview_image_on_button_press() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) preview_projection_idx (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) preview_slice_idx (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) previewPushButton (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) previews (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) previewsLayout (mantidimaging.gui.dialogs.op_history_copy.view.OpHistoryCopyDialogView attribute) (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) Progress (class in mantidimaging.core.utility.progress_reporting.progress) progress_update() (mantidimaging.core.utility.progress_reporting.console_progress_bar.ConsoleProgressBar method) (mantidimaging.core.utility.progress_reporting.progress.ProgressHandler method) (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter method) progress_updated (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter attribute) (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter attribute) ProgressHandler (class in mantidimaging.core.utility.progress_reporting.progress) ProgressHistory (class in mantidimaging.core.utility.progress_reporting.progress) proj180deg (mantidimaging.core.data.dataset.StrictDataset property) (mantidimaging.core.data.imagestack.ImageStack property) proj180s (mantidimaging.gui.windows.main.model.MainWindowModel property) proj_180_degree_shape_matches_images() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel static method) (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) proj_180deg (mantidimaging.core.utility.data_containers.LoadingParameters attribute) projection() (mantidimaging.core.data.imagestack.ImageStack method) PROJECTION_ANGLE (mantidimaging.core.utility.imat_log_file_parser.IMATLogColumn attribute) projection_angles() (mantidimaging.core.data.imagestack.ImageStack method) (mantidimaging.core.utility.imat_log_file_parser.IMATLogFile method) PROJECTION_NUMBER (mantidimaging.core.utility.imat_log_file_parser.IMATLogColumn attribute) projection_numbers() (mantidimaging.core.utility.imat_log_file_parser.IMATLogFile method) ProjectionAngleFileParser (class in mantidimaging.core.utility.projection_angle_parser) ProjectionAngles (class in mantidimaging.core.utility.data_containers) projections (mantidimaging.core.data.imagestack.ImageStack property) Projections (mantidimaging.gui.windows.nexus_load_dialog.presenter.ImageKeys attribute)

Q

QTreeDatasetWidgetItem (class in mantidimaging.gui.windows.main.view)

R

raise_error_when_images_not_found() (mantidimaging.gui.windows.main.model.MainWindowModel method) raise_error_when_parent_dataset_not_found() (mantidimaging.gui.windows.main.model.MainWindowModel method) raise_error_when_parent_strict_dataset_not_found() (mantidimaging.gui.windows.main.model.MainWindowModel method) raise_if_angle_missing() (mantidimaging.core.utility.imat_log_file_parser.IMATLogFile method) raise_not_implemented() (in module mantidimaging.core.operations.base_filter) range_changed (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget attribute) range_control (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget attribute) read_in_file_information() (in module mantidimaging.core.io.loader.loader) real_projection_angles() (mantidimaging.core.data.imagestack.ImageStack method) RebinFilter (class in mantidimaging.core.operations.rebin.rebin) recon (mantidimaging.gui.windows.main.view.MainWindowView attribute) recon() (mantidimaging.core.utility.command_line_arguments.CommandLineArguments class method) recon_list_ids (mantidimaging.gui.windows.main.model.MainWindowModel property) recon_params() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) recon_preview() (mantidimaging.gui.dialogs.cor_inspection.model.CORInspectionDialogModel method) ReconImagesView (class in mantidimaging.gui.windows.recon.image_view) ReconList (class in mantidimaging.core.data.reconlist) RECONSTRUCT_PREVIEW_SLICE (mantidimaging.gui.windows.recon.presenter.Notifications attribute) RECONSTRUCT_PREVIEW_USER_CLICK (mantidimaging.gui.windows.recon.presenter.Notifications attribute) RECONSTRUCT_STACK_SLICE (mantidimaging.gui.windows.recon.presenter.Notifications attribute) RECONSTRUCT_USER_CLICK (mantidimaging.gui.windows.recon.presenter.Notifications attribute) RECONSTRUCT_VOLUME (mantidimaging.gui.windows.recon.presenter.Notifications attribute) ReconstructionParameters (class in mantidimaging.core.utility.data_containers) reconstructSlice (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) reconstructVolume (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) ReconstructWindowModel (class in mantidimaging.gui.windows.recon.model) ReconstructWindowPresenter (class in mantidimaging.gui.windows.recon.presenter) ReconstructWindowView (class in mantidimaging.gui.windows.recon.view) reconTab (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) record_histogram_regions() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) record_operation() (mantidimaging.core.data.imagestack.ImageStack method) ref (mantidimaging.core.utility.leak_tracker.ItemInfo attribute) REFINE_COR (mantidimaging.gui.windows.recon.presenter.Notifications attribute) REFINE_ITERS (mantidimaging.gui.windows.recon.presenter.Notifications attribute) refineCorBtn (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) refineIterationsBtn (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) REFRESH_IMAGE (mantidimaging.gui.windows.stack_visualiser.presenter.SVNotification attribute) refresh_image() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) REGISTER_ACTIVE_FILTER (mantidimaging.gui.windows.operations.presenter.Notification attribute) register_gui() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter static method) (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter static method) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter static method) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.rebin.rebin.RebinFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter static method) RELOAD_DATASETS (mantidimaging.gui.widgets.dataset_selector.presenter.Notification attribute) RemovableRowTableView (class in mantidimaging.gui.widgets.removable_row_table_view)

remove() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataCheck method) remove_container() (mantidimaging.gui.windows.main.model.MainWindowModel method) remove_item_from_tree_view() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) remove_point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) REMOVE_SELECTED_COR (mantidimaging.gui.windows.recon.presenter.Notifications attribute) remove_selected_cor() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) REMOVE_STACK (mantidimaging.gui.windows.main.presenter.Notification attribute) removeAllRows() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) RemoveAllStripesFilter (class in mantidimaging.core.operations.remove_all_stripe.remove_all_stripe) removeBtn (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) RemoveDeadStripesFilter (class in mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe) RemoveLargeStripesFilter (class in mantidimaging.core.operations.remove_large_stripe.remove_large_stripe) removeRows() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) removeSelectedRows() (mantidimaging.gui.widgets.removable_row_table_view.RemovableRowTableView method) RemoveStripeFilteringFilter (class in mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering) RemoveStripeSortingFittingFilter (class in mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting) RENAME_STACK (mantidimaging.gui.windows.main.presenter.Notification attribute) rename_stack() (mantidimaging.gui.windows.main.view.MainWindowView method) replace_child_item_id() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) RescaleFilter (class in mantidimaging.core.operations.rescale.rescale) reset() (mantidimaging.gui.widgets.line_profile_plot.view.ImageViewLineROI method) (mantidimaging.gui.widgets.line_profile_plot.view.LineProfilePlot method) reset_cor_model() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) reset_is_needed() (mantidimaging.gui.widgets.line_profile_plot.view.ImageViewLineROI method) reset_projection_preview() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) reset_recon_and_sino_previews() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) reset_recon_histogram() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) reset_recon_line_profile() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) reset_selected_row() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) reset_slice_and_tilt() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) resizeEvent() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) restore_histogram_regions() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) resultCor (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) resultSlope (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) resultTab (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) resultTilt (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) return_to_second_at_i() (in module mantidimaging.core.parallel.shared) return_to_self() (in module mantidimaging.core.parallel.shared) right (mantidimaging.core.utility.sensible_roi.SensibleROI attribute) RingRemovalFilter (class in mantidimaging.core.operations.ring_removal.ring_removal) roi (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget attribute) ROI (mantidimaging.gui.windows.stack_visualiser.presenter.SVParameters attribute) roi_changed (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget attribute) roi_changed_callback (mantidimaging.gui.widgets.mi_image_view.view.MIImageView attribute) roi_changed_callback() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) roi_updated (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView attribute) roi_visualiser() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) roiChanged() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) RoiNormalisationFilter (class in mantidimaging.core.operations.roi_normalisation.roi_normalisation) roiString (mantidimaging.gui.widgets.mi_image_view.view.MIImageView attribute) RotateFilter (class in mantidimaging.core.operations.rotate_stack.rotate_stack) rotation_centre (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) rotation_matrix2d() (in module mantidimaging.core.reconstruct.astra_recon) rowCount() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) run() (mantidimaging.gui.dialogs.async_task.task.TaskWorkerThread method) run_action() (mantidimaging.gui.windows.wizard.presenter.WizardPresenter method) run_compute_func() (in module mantidimaging.core.parallel.shared) run_compute_func_impl() (in module mantidimaging.core.parallel.utility) run_full_recon() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) run_preview_recon() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) run_reconstruct() (in module mantidimaging.core.tools.tomopy_tool) (mantidimaging.core.tools.abstract_tool.AbstractTool method) (mantidimaging.core.tools.tomopy_tool.TomoPyTool method)

S

safe_import() (in module mantidimaging.core.utility.optional_imports) sample (mantidimaging.core.data.dataset.StrictDataset attribute) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) SAMPLE (mantidimaging.gui.windows.spectrum_viewer.model.SpecType attribute) sample_name() (mantidimaging.gui.windows.main.nexus_save_dialog.NexusSaveDialog method) SAMPLE_NORMED (mantidimaging.gui.windows.spectrum_viewer.model.SpecType attribute) sampleStackSelector (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView attribute) save_all() (mantidimaging.gui.windows.main.image_save_dialog.ImageSaveDialog method) save_csv() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) SAVE_ERROR_STRING (mantidimaging.gui.windows.main.presenter.MainWindowPresenter attribute) save_image_files() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) save_metadata() (mantidimaging.core.data.imagestack.ImageStack method) save_nexus_file() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) save_path() (mantidimaging.gui.windows.main.image_save_dialog.ImageSaveDialog method) (mantidimaging.gui.windows.main.nexus_save_dialog.NexusSaveDialog method) ScalarCoR (class in mantidimaging.core.utility.data_containers) scan_nexus_file() (mantidimaging.gui.windows.nexus_load_dialog.presenter.NexusLoadPresenter method) SCROLL_PREVIEW_DOWN (mantidimaging.gui.windows.operations.presenter.Notification attribute) SCROLL_PREVIEW_UP (mantidimaging.gui.windows.operations.presenter.Notification attribute) select_directory() (in module mantidimaging.gui.utility.qt_helpers) SELECT_ELIGIBLE_STACK (mantidimaging.gui.widgets.dataset_selector.presenter.Notification attribute) select_eligible_stack() (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView method) select_file() (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog static method) selected_dataset (mantidimaging.gui.windows.main.nexus_save_dialog.NexusSaveDialog attribute) selected_filter (mantidimaging.gui.windows.operations.model.FiltersWindowModel attribute) selected_op_indices (mantidimaging.gui.dialogs.op_history_copy.view.OpHistoryCopyDialogView property) selected_row (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) selected_stack (mantidimaging.gui.windows.main.image_save_dialog.ImageSaveDialog attribute) SensibleROI (class in mantidimaging.core.utility.sensible_roi) serialize() (mantidimaging.core.operation_history.operations.ImageOperation method) set() (mantidimaging.core.utility.data_containers.LoadingParameters method) set_auto_color_enabled() (mantidimaging.gui.widgets.auto_colour_menu.auto_color_menu.AutoColorMenu method) set_cor_at_slice() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) set_correlate_buttons_enabled() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) set_data_found() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) set_estimated_steps() (mantidimaging.core.utility.progress_reporting.progress.Progress method) set_filter_by_name() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) set_filters_for_recon_tool() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) set_found_status() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog static method) set_histogram_log_scale() (in module mantidimaging.core.utility.histogram) (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) set_icon() (mantidimaging.gui.widgets.indicator_icon.view.IndicatorIconView method) set_image() (mantidimaging.gui.dialogs.cor_inspection.recon_slice_view.CompareSlicesView method) (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView method) (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) set_images() (mantidimaging.gui.windows.image_load_dialog.field.Field method) set_images_found() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) set_last_cor() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) set_log_scale() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) set_max_projection_index() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) set_max_slice_index() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) set_maximum_cor() (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView method) set_normalise_dropdown_state() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) set_normalise_error() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) set_normalise_stack() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) set_on_complete() (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter method) set_parameters() (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter method) set_point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) set_precalculated() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) set_preview_image_index() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) set_preview_projection_idx() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) set_preview_slice_idx() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) set_progress() (mantidimaging.gui.dialogs.async_task.view.AsyncTaskDialogView method) set_projection_angles() (mantidimaging.core.data.imagestack.ImageStack method) set_projections_increment() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) set_range() (mantidimaging.gui.windows.operations.filter_previews.ZSlider method) set_recon_buttons_enabled() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) set_results() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) set_roi() (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) set_row() (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) set_sample_log() (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter method) set_selected_image() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) set_show_at_start() (mantidimaging.gui.windows.welcome_screen.view.WelcomeScreenView method) set_siblings() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView static method) set_source_stack() (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter method) set_spectrum() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) set_stack() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel method) set_stack_uuid() (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter method) (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter method) set_step() (mantidimaging.gui.windows.image_load_dialog.field.Field method) set_table_point() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) set_target_stack() (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter method) set_task() (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter method) set_tilt() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) set_timeline_to_tick_nearest() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) set_tracker() (mantidimaging.gui.dialogs.async_task.model.AsyncTaskDialogModel method) (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter method) set_up_links() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter method) set_up_show_at_start() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter method) set_up_TV_regularisation() (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) set_value() (mantidimaging.gui.windows.operations.filter_previews.ZSlider method) set_version_label() (mantidimaging.gui.windows.welcome_screen.view.WelcomeScreenView method) setData() (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) setImage() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) setUp() (mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test.StackChoicePresenterTest method) (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) (mantidimaging.gui.windows.welcome_screen.tests.view_test.WelcomeScreenViewTest method) setup_application() (in module mantidimaging.gui.gui) setup_filter() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) setup_overlay() (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataCheck method) setup_shortcuts() (mantidimaging.gui.windows.main.view.MainWindowView method) setUpClass() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest class method) (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest class method) (mantidimaging.gui.windows.welcome_screen.tests.view_test.WelcomeScreenViewTest class method) shape (mantidimaging.core.io.loader.loader.FileInformation attribute) shared_array (mantidimaging.core.data.imagestack.ImageStack property) SharedArray (class in mantidimaging.core.parallel.utility) SharedArrayProxy (class in mantidimaging.core.parallel.utility) should_cancel (mantidimaging.core.utility.progress_reporting.progress.Progress property) show() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) (mantidimaging.gui.windows.stack_choice.compare_presenter.StackComparePresenter method) (mantidimaging.gui.windows.stack_choice.presenter.StackChoicePresenter method) (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter method) (mantidimaging.gui.windows.wizard.presenter.WizardPresenter method) show_about() (mantidimaging.gui.windows.main.view.MainWindowView method) show_at_start_changed() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter method) show_at_start_enabled() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter static method) show_data_error() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) show_delayed() (mantidimaging.gui.dialogs.async_task.view.AsyncTaskDialogView method) show_details() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method)

show_error() (mantidimaging.gui.mvp_base.presenter.BasePresenter method) (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog method) show_error_dialog() (mantidimaging.gui.mvp_base.view.BaseDialogView method) (mantidimaging.gui.mvp_base.view.BaseMainWindowView method) (mantidimaging.gui.windows.operations.view.FiltersWindowView method) show_exception() (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog method) show_filters_window() (mantidimaging.gui.windows.main.view.MainWindowView method) show_from_timer() (mantidimaging.gui.dialogs.async_task.view.AsyncTaskDialogView method) show_image_load_dialog() (mantidimaging.gui.windows.main.view.MainWindowView method) show_image_metadata() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) show_image_save_dialog() (mantidimaging.gui.windows.main.view.MainWindowView method) show_info_dialog() (mantidimaging.gui.mvp_base.view.BaseMainWindowView method) show_information() (mantidimaging.gui.mvp_base.presenter.BasePresenter method) show_negative_overlay (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter attribute) show_negative_overlay() (mantidimaging.gui.windows.operations.model.FiltersWindowModel method) show_new_sample() (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter method) show_nexus_load_dialog() (mantidimaging.gui.windows.main.view.MainWindowView method) show_nexus_save_dialog() (mantidimaging.gui.windows.main.view.MainWindowView method) show_op_history_copy_dialog() (mantidimaging.gui.windows.stack_visualiser.view.StackVisualiserView method) show_operation() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) show_operation_cancelled() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) show_operation_completed() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) show_recon_volume() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) show_recon_window() (mantidimaging.gui.windows.main.view.MainWindowView method) show_spectrum_viewer_window() (mantidimaging.gui.windows.main.view.MainWindowView method) show_stack_select_dialog() (mantidimaging.gui.windows.main.view.MainWindowView method) show_stacks (mantidimaging.gui.widgets.dataset_selector.presenter.DatasetSelectorWidgetPresenter attribute) show_status_message() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) show_step() (mantidimaging.gui.windows.wizard.view.WizardStep method) show_today() (mantidimaging.gui.windows.welcome_screen.presenter.WelcomeScreenPresenter static method) show_versions() (mantidimaging.core.utility.version_check.CheckVersion method) show_wizard() (mantidimaging.gui.windows.main.view.MainWindowView method) showEvent() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) sigSliceIndexChanged (mantidimaging.gui.windows.recon.image_view.ReconImagesView attribute) single_sino() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method) SingleValue (class in mantidimaging.core.utility.data_containers) sino() (mantidimaging.core.data.imagestack.ImageStack method) sino_as_image_stack() (mantidimaging.core.data.imagestack.ImageStack method) sino_text (mantidimaging.gui.windows.main.view.MainWindowView property) SINOGRAM_FILTER_INFO (mantidimaging.core.operations.base_filter.BaseFilter attribute) sinograms (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.io.loader.loader.FileInformation attribute) (mantidimaging.core.utility.data_containers.LoadingParameters attribute) slice_as_image_stack() (mantidimaging.core.data.imagestack.ImageStack method) slice_changed() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) slice_index (mantidimaging.core.rotation.data_model.Point attribute) SLICE_INDEX (mantidimaging.gui.windows.recon.point_table_model.Column attribute) slice_line_moved() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) slices (mantidimaging.core.rotation.data_model.CorTiltDataModel property) (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) Slope (class in mantidimaging.core.utility.data_containers) slope (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) sort_by_tomo_and_recon() (in module mantidimaging.gui.windows.main.image_save_dialog) sort_points() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) (mantidimaging.gui.windows.recon.point_table_model.CorTiltPointQtModel method) source_file (mantidimaging.core.utility.imat_log_file_parser.IMATLogFile property) spectrum (mantidimaging.gui.windows.spectrum_viewer.spectrum_widget.SpectrumWidget attribute) spectrum_mode (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter attribute) spectrum_viewer (mantidimaging.gui.windows.main.view.MainWindowView attribute) SpectrumViewerWindowModel (class in mantidimaging.gui.windows.spectrum_viewer.model) SpectrumViewerWindowPresenter (class in mantidimaging.gui.windows.spectrum_viewer.presenter) SpectrumViewerWindowView (class in mantidimaging.gui.windows.spectrum_viewer.view) SpectrumWidget (class in mantidimaging.gui.windows.spectrum_viewer.spectrum_widget) SpecType (class in mantidimaging.gui.windows.spectrum_viewer.model) spin_box (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute) splitter (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) STACK (mantidimaging.gui.utility.qt_helpers.Type attribute) stack (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter attribute) stack_changed (mantidimaging.gui.windows.main.view.MainWindowView attribute) stack_contains_nans() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) stack_contains_negative_values() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) stack_contains_zeroes() (mantidimaging.gui.windows.recon.model.ReconstructWindowModel method) stack_id (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) stack_list (mantidimaging.gui.windows.main.view.MainWindowView property) stack_names (mantidimaging.gui.windows.main.view.MainWindowView property) stack_properties (mantidimaging.core.rotation.data_model.CorTiltDataModel property) stack_selected_uuid (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView attribute) stack_visualiser_list (mantidimaging.gui.windows.main.presenter.MainWindowPresenter property) stack_visualiser_names (mantidimaging.gui.windows.main.presenter.MainWindowPresenter property) StackChoicePresenter (class in mantidimaging.gui.windows.stack_choice.presenter) StackChoicePresenterMixin (class in mantidimaging.gui.windows.stack_choice.presenter_base) StackChoicePresenterTest (class in mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test) (class in mantidimaging.gui.windows.stack_choice.tests.presenter_test) StackChoiceView (class in mantidimaging.gui.windows.stack_choice.view) StackChoiceViewTest (class in mantidimaging.gui.windows.stack_choice.tests.view_test) StackComparePresenter (class in mantidimaging.gui.windows.stack_choice.compare_presenter) stackedWidget (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) StackId (class in mantidimaging.gui.windows.main.presenter) stacks (mantidimaging.core.data.reconlist.ReconList property) stackSelector (mantidimaging.gui.windows.operations.view.FiltersWindowView attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) StackVisualiserPresenter (class in mantidimaging.gui.windows.stack_visualiser.presenter) StackVisualiserView (class in mantidimaging.gui.windows.stack_visualiser.view) start (mantidimaging.core.utility.data_containers.Indices attribute) START (mantidimaging.gui.dialogs.async_task.presenter.Notification attribute) start_async_task_view() (in module mantidimaging.gui.dialogs.async_task.view) statusMessageTextEdit (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) step (mantidimaging.core.utility.data_containers.Indices attribute) (mantidimaging.core.utility.progress_reporting.progress.ProgressHistory attribute) step_all (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog attribute) step_preview (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog attribute) step_size (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView property) stepCOR (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute) stepIterations (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute) stepStackedWidget (mantidimaging.gui.dialogs.cor_inspection.view.CORInspectionDialogView attribute) STR (mantidimaging.gui.utility.qt_helpers.Type attribute) strict_dataset_list (mantidimaging.gui.windows.main.presenter.MainWindowPresenter property) (mantidimaging.gui.windows.main.view.MainWindowView property) StrictDataset (class in mantidimaging.core.data.dataset) sub() (in module mantidimaging.gui.windows.operations.presenter) subscribe_to_main_window() (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView method) suffix (mantidimaging.gui.windows.image_load_dialog.presenter.TypeInfo attribute) sum_images() (mantidimaging.gui.windows.stack_visualiser.model.SVModel static method) SUMMED (mantidimaging.gui.windows.stack_visualiser.presenter.SVImageMode attribute) supported_formats() (in module mantidimaging.core.io.loader.loader) sv_params() (mantidimaging.core.operations.base_filter.BaseFilter static method) SVImageMode (class in mantidimaging.gui.windows.stack_visualiser.presenter) SVModel (class in mantidimaging.gui.windows.stack_visualiser.model) SVNotification (class in mantidimaging.gui.windows.stack_visualiser.presenter) SVParameters (class in mantidimaging.gui.windows.stack_visualiser.presenter) SWAP_AXES (mantidimaging.gui.windows.stack_visualiser.presenter.SVNotification attribute) swap_axes() (mantidimaging.gui.windows.stack_visualiser.model.SVModel static method) system_free_memory() (in module mantidimaging.core.utility.memory_usage)

T

tableView (mantidimaging.gui.windows.recon.view.ReconstructWindowView attribute) task_done (mantidimaging.gui.dialogs.async_task.model.AsyncTaskDialogModel attribute) task_function (mantidimaging.gui.dialogs.async_task.task.TaskWorkerThread attribute) task_is_running (mantidimaging.gui.dialogs.async_task.model.AsyncTaskDialogModel property) (mantidimaging.gui.dialogs.async_task.presenter.AsyncTaskDialogPresenter property) TaskWorkerThread (class in mantidimaging.gui.dialogs.async_task.task) tearDown() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) (mantidimaging.gui.windows.welcome_screen.tests.view_test.WelcomeScreenViewTest method) tearDownClass() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest class method) (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest class method) (mantidimaging.gui.windows.welcome_screen.tests.view_test.WelcomeScreenViewTest class method) test_add_link() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_check_issues() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_clean_up_original_images_stack() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_close_view_calls_close_on_view() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_close_view_sets_done_true() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_closeEvent() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_closeEvent_message_pop_up_if_choice_not_made_and_doesnt_notify_presenter_on_cancel() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_closeEvent_message_pop_up_if_choice_not_made_and_notifies_presenter_on_ok() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_connect_histogram_changes() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_do_clean_up_original_data() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_do_reapply_original_data() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_do_toggle_lock_histograms() (mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test.StackChoicePresenterTest method) (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_ensure_range_is_the_same_new_stack_max_original_stack_min() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_ensure_range_is_the_same_new_stack_min_original_stack_max() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_execute_wrapper_no_preset() (in module mantidimaging.core.operations.rescale.rescale_test) test_execute_wrapper_with_preset() (in module mantidimaging.core.operations.rescale.rescale_test) test_hides_buttons() (mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test.StackChoicePresenterTest method) test_images_are_synced() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_init() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_no_issues_added() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_notify_choose_new_data() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_notify_choose_original() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_notify_handles_exceptions() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_presenter_doesnt_raise_lists_for_original_stack() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_presenter_throws_if_uuid_is_not_in_stack() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_rescale() (in module mantidimaging.core.operations.rescale.rescale_test) test_rescale_ignores_nans() (in module mantidimaging.core.operations.rescale.rescale_test) test_scale_single_image() (in module mantidimaging.core.operations.rescale.rescale_test) test_scale_single_image_bad_offset() (in module mantidimaging.core.operations.rescale.rescale_test) test_set_histogram_log_scale() (in module mantidimaging.core.utility.histogram_test) test_set_up_show_at_start() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_set_version_label() (mantidimaging.gui.windows.welcome_screen.tests.view_test.WelcomeScreenViewTest method) test_sets_choice_made() (mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test.StackChoicePresenterTest method)

test_setup_stack_for_view() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_show() (mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test.StackChoicePresenterTest method) (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_show_at_start_change() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_show_at_start_init() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_show_calls_show_in_the_view() (mantidimaging.gui.windows.stack_choice.tests.presenter_test.StackChoicePresenterTest method) test_show_today() (mantidimaging.gui.windows.welcome_screen.tests.presenter_test.WelcomeScreenPresenterTest method) test_sync_roi_plot_for_new_stack_with_old_stack() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_sync_roi_plot_for_old_stack_with_new_stack() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_sync_timelines_for_new_stack_with_old_stack() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_sync_timelines_for_old_stack_with_new_stack() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_titles_set() (mantidimaging.gui.windows.stack_choice.tests.compare_presenter_test.StackChoicePresenterTest method) test_toggle_roi_show_false() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) test_toggle_roi_show_true() (mantidimaging.gui.windows.stack_choice.tests.view_test.StackChoiceViewTest method) TextLogParser (class in mantidimaging.core.utility.imat_log_file_parser) tilt (mantidimaging.core.utility.data_containers.ReconstructionParameters attribute) (mantidimaging.gui.windows.recon.view.ReconstructWindowView property) tilt_angle (mantidimaging.gui.windows.recon.model.ReconstructWindowModel property) time (mantidimaging.core.utility.progress_reporting.progress.ProgressHistory attribute) timeLineChanged() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) TIMESTAMP (mantidimaging.core.utility.imat_log_file_parser.IMATLogColumn attribute) to_dict() (mantidimaging.core.utility.data_containers.ReconstructionParameters method) to_list_string() (mantidimaging.core.utility.sensible_roi.SensibleROI method) to_partial() (mantidimaging.core.operation_history.operations.ImageOperation method) to_scalar() (mantidimaging.core.utility.data_containers.VectorCoR method) to_vec() (mantidimaging.core.utility.data_containers.ScalarCoR method) tof_range (mantidimaging.gui.windows.spectrum_viewer.model.SpectrumViewerWindowModel attribute) toggle_filters_section() (mantidimaging.gui.windows.operations.view.FiltersWindowView method) TOGGLE_IMAGE_MODE (mantidimaging.gui.windows.stack_visualiser.presenter.SVNotification attribute) toggle_image_mode() (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter method) toggle_jumping_frame() (mantidimaging.gui.widgets.mi_image_view.view.MIImageView method) TOGGLE_LOCK_HISTOGRAMS (mantidimaging.gui.windows.stack_choice.view.Notification attribute) tomopy_available() (in module mantidimaging.core.utility.optional_imports) TomopyRecon (class in mantidimaging.core.reconstruct.tomopy_recon) TomoPyTool (class in mantidimaging.core.tools.tomopy_tool) tool_supported_methods() (mantidimaging.core.tools.abstract_tool.AbstractTool static method) (mantidimaging.core.tools.tomopy_tool.TomoPyTool static method) top (mantidimaging.core.utility.sensible_roi.SensibleROI attribute) total_seconds (mantidimaging.core.utility.execution_timer.ExecutionTimer property) tree (mantidimaging.gui.windows.image_load_dialog.view.ImageLoadDialog attribute) (mantidimaging.gui.windows.nexus_load_dialog.view.NexusLoadDialog attribute) try_to_select_relevant_normalise_stack() (mantidimaging.gui.windows.spectrum_viewer.view.SpectrumViewerWindowView method) try_to_select_relevant_stack() (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView method) TUPLE (mantidimaging.gui.utility.qt_helpers.Type attribute) Type (class in mantidimaging.gui.utility.qt_helpers) TypeInfo (class in mantidimaging.gui.windows.image_load_dialog.presenter)

U

UNCAUGHT_EXCEPTION (mantidimaging.gui.windows.main.view.MainWindowView attribute) uncaught_exception() (mantidimaging.gui.windows.main.view.MainWindowView method) unlink_all_views() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) unlink_sibling_axis() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) unlink_sibling_histogram() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) UnrotateablePlotROI (class in mantidimaging.gui.widgets.mi_image_view.view) unsubscribe_from_main_window() (mantidimaging.gui.widgets.dataset_selector.view.DatasetSelectorWidgetView method) update() (mantidimaging.core.utility.progress_reporting.progress.Progress method) (mantidimaging.gui.widgets.line_profile_plot.view.LineProfilePlot method) update_histogram_data() (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews method) update_indices() (mantidimaging.gui.windows.image_load_dialog.field.Field method) UPDATE_PARAMETERS_FROM_UI (mantidimaging.gui.dialogs.cor_inspection.presenter.Notification attribute) UPDATE_PREVIEWS (mantidimaging.gui.windows.operations.presenter.Notification attribute)

UPDATE_PROJECTION (mantidimaging.gui.windows.recon.presenter.Notifications attribute) update_projection() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) update_recon() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) update_recon_hist() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) update_recon_preview() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) update_shape() (mantidimaging.gui.windows.image_load_dialog.field.Field method) update_shortcuts() (mantidimaging.gui.windows.main.view.MainWindowView method) update_sibling_histograms() (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView method) update_sinogram() (mantidimaging.gui.windows.recon.image_view.ReconImagesView method) (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) use (mantidimaging.gui.windows.image_load_dialog.field.Field property) uses_shared_memory (mantidimaging.core.data.imagestack.ImageStack property)

V

validate() (mantidimaging.core.operations.median_filter.median_filter.KernelSpinBox method) (mantidimaging.core.utility.imat_log_file_parser.CSVLogParser static method) (mantidimaging.core.utility.imat_log_file_parser.TextLogParser static method) validate_execute_kwargs() (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) value (mantidimaging.core.utility.data_containers.Counts attribute) (mantidimaging.core.utility.data_containers.Degrees attribute) (mantidimaging.core.utility.data_containers.Micron attribute) (mantidimaging.core.utility.data_containers.ProjectionAngles attribute) (mantidimaging.core.utility.data_containers.ScalarCoR attribute) (mantidimaging.core.utility.data_containers.SingleValue attribute) (mantidimaging.core.utility.data_containers.Slope attribute) (mantidimaging.core.utility.data_containers.VectorCoR attribute) value_changed() (mantidimaging.gui.windows.operations.filter_previews.ZSlider method)

valueChanged (mantidimaging.gui.windows.operations.filter_previews.ZSlider attribute) vec_geom_init2d() (in module mantidimaging.core.reconstruct.astra_recon) VectorCoR (class in mantidimaging.core.utility.data_containers) view (mantidimaging.gui.dialogs.cor_inspection.presenter.CORInspectionDialogPresenter attribute) (mantidimaging.gui.dialogs.op_history_copy.presenter.OpHistoryCopyDialogPresenter attribute) (mantidimaging.gui.mvp_base.presenter.BasePresenter attribute) (mantidimaging.gui.widgets.dataset_selector.presenter.DatasetSelectorWidgetPresenter attribute) (mantidimaging.gui.windows.image_load_dialog.presenter.LoadPresenter attribute) (mantidimaging.gui.windows.main.presenter.MainWindowPresenter attribute) (mantidimaging.gui.windows.nexus_load_dialog.presenter.NexusLoadPresenter attribute) (mantidimaging.gui.windows.operations.presenter.FiltersWindowPresenter attribute) (mantidimaging.gui.windows.recon.presenter.ReconstructWindowPresenter attribute) (mantidimaging.gui.windows.spectrum_viewer.presenter.SpectrumViewerWindowPresenter attribute) (mantidimaging.gui.windows.stack_visualiser.presenter.StackVisualiserPresenter attribute) viewbox (mantidimaging.gui.widgets.bad_data_overlay.bad_data_overlay.BadDataOverlay property) (mantidimaging.gui.widgets.mi_image_view.view.MIImageView property) (mantidimaging.gui.widgets.mi_mini_image_view.view.MIMiniImageView property)

W

warn_user() (mantidimaging.gui.windows.recon.view.ReconstructWindowView method) was_successful() (mantidimaging.gui.dialogs.async_task.task.TaskWorkerThread method) WelcomeScreenPresenter (class in mantidimaging.gui.windows.welcome_screen.presenter) WelcomeScreenPresenterTest (class in mantidimaging.gui.windows.welcome_screen.tests.presenter_test) WelcomeScreenView (class in mantidimaging.gui.windows.welcome_screen.view) WelcomeScreenViewTest (class in mantidimaging.gui.windows.welcome_screen.tests.view_test) widget (mantidimaging.gui.windows.image_load_dialog.field.Field property) width (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.utility.sensible_roi.SensibleROI property)

wizard_action_load() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) wizard_action_show_reconstruction() (mantidimaging.gui.windows.main.presenter.MainWindowPresenter method) WizardPresenter (class in mantidimaging.gui.windows.wizard.presenter) WizardStage (class in mantidimaging.gui.windows.wizard.view) WizardStep (class in mantidimaging.gui.windows.wizard.view) WizardView (class in mantidimaging.gui.windows.wizard.view) write() (mantidimaging.core.io.csv_output.CSVOutput method) write_fits() (in module mantidimaging.core.io.saver) write_img() (in module mantidimaging.core.io.saver) write_nxs() (in module mantidimaging.core.io.saver)

X

x (mantidimaging.core.utility.close_enough_point.CloseEnoughPoint attribute)

Y

y (mantidimaging.core.utility.close_enough_point.CloseEnoughPoint attribute)

Z

z_line (mantidimaging.gui.windows.operations.filter_previews.ZSlider attribute)

z_slider (mantidimaging.gui.windows.operations.filter_previews.FilterPreviews attribute) ZSlider (class in mantidimaging.gui.windows.operations.filter_previews)