mantidimaging.core.data.imagestack module¶

class mantidimaging.core.data.imagestack.ImageStack(data: ndarray | SharedArray, filenames: List[str] | None = None, indices: List[int] | Indices | None = None, metadata: Dict[str, Any] | None = None, sinograms: bool = False, name: str | None = None)[source]¶

Bases: object

clear_proj180deg()[source]¶

copy(flip_axes=False) → ImageStack[source]¶

copy_roi(roi: SensibleROI)[source]¶

count() → int[source]¶

counts() → Counts | None[source]¶

static create_empty_image_stack(shape, dtype, metadata) → ImageStack[source]¶

property data: ndarray¶

property dtype¶

property filenames: List[str] | None¶

property h_middle: float¶: Returns the horizontal middle (middle column) of the projections

has_proj180deg()[source]¶

property height¶

property id: UUID¶

property is_processed: bool¶

Returns:: True if any of the data has been processed, False otherwise.

property is_sinograms: bool¶

load_metadata(f: TextIO)[source]¶

property log_file¶

make_name_unique(existing_names: List[str])[source]¶

name: str¶

property num_images: int¶

property num_projections: int¶

property num_sinograms: int¶

property pixel_size¶

property proj180deg: ImageStack | None¶

projection(projection_idx) → ndarray[source]¶

projection_angles(max_angle: float = 360.0) → ProjectionAngles[source]¶

Return projection angles, in priority order: - From a log - From the manually loaded file with a list of angles - Automatically generated with equidistant step

Parameters:: max_angle – The maximum angle up to which the angles will be generated. Only used when the angles are generated, if they are provided via a log or a file the argument will be ignored.

property projections¶

real_projection_angles() → ProjectionAngles | None[source]¶: Return only the projection angles that are from a log file or have been manually loaded. :return: Real projection angles if they were found, None otherwise.

record_operation(func_name: str, display_name, *args, **kwargs)[source]¶

save_metadata(f: TextIO, rescale_params: Dict[str, str | float] | None = None)[source]¶

set_projection_angles(angles: ProjectionAngles)[source]¶

property shared_array: SharedArray¶

sino(slice_idx) → ndarray[source]¶

sino_as_image_stack(index) → ImageStack[source]¶: A single sinogram slice as an ImageStack in projection ordering

property sinograms¶

slice_as_array(index) → ndarray[source]¶

slice_as_image_stack(index) → ImageStack[source]¶: A slice, either projection or sinogram depending on current ordering

property uses_shared_memory: bool¶

property width¶