Index

A

abort() (mantidimaging.eyes_tests.eyes_manager.EyesManager method) add_column() (mantidimaging.core.io.csv_output.CSVOutput method) add_point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) add_recon() (mantidimaging.core.data.dataset.BaseDataset method) add_stack() (mantidimaging.core.data.dataset.MixedDataset method) Advanced (mantidimaging.core.operations.base_filter.FilterGroup attribute) all (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.dataset.MixedDataset property) (mantidimaging.core.data.dataset.StrictDataset property) all_files() (mantidimaging.core.io.filenames.FilenameGroup method) all_image_ids (mantidimaging.core.data.dataset.BaseDataset property)

allowed_filters() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method) allowed_recon_kwargs() (in module mantidimaging.core.reconstruct.astra_recon) (in module mantidimaging.core.reconstruct.cil_recon) (in module mantidimaging.core.reconstruct.tomopy_recon) angle_in_degrees (mantidimaging.core.rotation.data_model.CorTiltDataModel property) ArithmeticFilter (class in mantidimaging.core.operations.arithmetic.arithmetic) array (mantidimaging.core.parallel.utility.SharedArrayProxy property) array_proxy (mantidimaging.core.parallel.utility.SharedArray property) AstraRecon (class in mantidimaging.core.reconstruct.astra_recon)

B

BaseDataset (class in mantidimaging.core.data.dataset) BaseEyesTest (class in mantidimaging.eyes_tests.base_eyes)

BaseFilter (class in mantidimaging.core.operations.base_filter) BaseRecon (class in mantidimaging.core.reconstruct.base_recon) Basic (mantidimaging.core.operations.base_filter.FilterGroup attribute)

C

calculate_chunksize() (in module mantidimaging.core.parallel.utility) check_data_stack() (in module mantidimaging.helper) check_target() (mantidimaging.eyes_tests.base_eyes.BaseEyesTest method) (mantidimaging.eyes_tests.eyes_manager.EyesManager method) CILRecon (class in mantidimaging.core.reconstruct.cil_recon) CircularMaskFilter (class in mantidimaging.core.operations.circular_mask.circular_mask) clear_memory_from_current_process_linux() (in module mantidimaging.core.parallel.manager) clear_points() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) clear_proj180deg() (mantidimaging.core.data.imagestack.ImageStack method) clear_results() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) ClipValuesFilter (class in mantidimaging.core.operations.clip_values.clip_values) close_eyes() (mantidimaging.eyes_tests.eyes_manager.EyesManager method) close_imaging() (mantidimaging.eyes_tests.eyes_manager.EyesManager method) CompareImagesWindowTest (class in mantidimaging.eyes_tests.compare_images_window_test) compute_function() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) compute_function_2d() (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) compute_function_2d_sino() (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method)

compute_function_sino() (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) copy() (mantidimaging.core.data.imagestack.ImageStack method) copy_into_shared_memory() (in module mantidimaging.core.parallel.utility) copy_roi() (mantidimaging.core.data.imagestack.ImageStack method) cor (mantidimaging.core.rotation.data_model.CorTiltDataModel property) (mantidimaging.core.rotation.data_model.Point attribute) cors (mantidimaging.core.rotation.data_model.CorTiltDataModel property) CorTiltDataModel (class in mantidimaging.core.rotation.data_model) count() (mantidimaging.core.data.imagestack.ImageStack method) counts() (mantidimaging.core.data.imagestack.ImageStack method) create_and_start_pool() (in module mantidimaging.core.parallel.manager) create_array() (in module mantidimaging.core.parallel.utility) create_empty_image_stack() (mantidimaging.core.data.imagestack.ImageStack static method) create_loading_parameters_for_file_path() (in module mantidimaging.core.io.loader.loader) create_partial() (in module mantidimaging.core.parallel.shared) CropCoordinatesFilter (class in mantidimaging.core.operations.crop_coords.crop_coords) CSVOutput (class in mantidimaging.core.io.csv_output) CudaExecuter (class in mantidimaging.core.gpu.utility)

D

dark_after (mantidimaging.core.data.dataset.StrictDataset attribute) dark_before (mantidimaging.core.data.dataset.StrictDataset attribute) data (mantidimaging.core.data.imagestack.ImageStack property) delete_recons() (mantidimaging.core.data.dataset.BaseDataset method) delete_stack() (mantidimaging.core.data.dataset.BaseDataset method) (mantidimaging.core.data.dataset.MixedDataset method) (mantidimaging.core.data.dataset.StrictDataset method)

deserialize_metadata() (in module mantidimaging.core.operation_history.operations) DivideFilter (class in mantidimaging.core.operations.divide.divide) do_calculate_correlation_err() (in module mantidimaging.core.rotation.polyfit_correlation) dtype (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.io.loader.loader.LoadingParameters attribute)

E

empty (mantidimaging.core.rotation.data_model.CorTiltDataModel property) enable_correct_fields_only() (in module mantidimaging.core.operations.flat_fielding.flat_fielding) (in module mantidimaging.core.operations.nan_removal.nan_removal) (in module mantidimaging.core.operations.roi_normalisation.roi_normalisation) end_pool() (in module mantidimaging.core.parallel.manager) enough_memory() (in module mantidimaging.core.parallel.utility) execute() (in module mantidimaging.core.io.loader.img_loader) (in module mantidimaging.core.parallel.shared) execute_impl() (in module mantidimaging.core.parallel.utility) execute_single() (in module mantidimaging.core.operations.crop_coords.crop_coords) execute_wrapper() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter static method) (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter static method) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter static method) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.rebin.rebin.RebinFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter static method)

eyes_manager (mantidimaging.eyes_tests.base_eyes.BaseEyesTest attribute) EyesManager (class in mantidimaging.eyes_tests.eyes_manager)

F

file_group (mantidimaging.core.io.loader.loader.ImageParameters attribute) FilenameGroup (class in mantidimaging.core.io.filenames) FilenamePattern (class in mantidimaging.core.io.filenames) FilenamePatternGolden (class in mantidimaging.core.io.filenames) filenames (mantidimaging.core.data.imagestack.ImageStack property) filter_array() (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) FILTER_CLASS (mantidimaging.core.operations.loader.OperationModule attribute) filter_func() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter class method) (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter static method) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter static method) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.rebin.rebin.RebinFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter class method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter class method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter class method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter class method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter static method) filter_name (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter attribute) (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter attribute) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter attribute) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter attribute) (mantidimaging.core.operations.divide.divide.DivideFilter attribute) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter attribute) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter attribute) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter attribute) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation attribute) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter attribute) (mantidimaging.core.operations.outliers.outliers.OutliersFilter attribute) (mantidimaging.core.operations.rebin.rebin.RebinFilter attribute) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter attribute) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter attribute) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter attribute) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter attribute) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter attribute) (mantidimaging.core.operations.rescale.rescale.RescaleFilter attribute) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter attribute) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter attribute) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter attribute)

FilterGroup (class in mantidimaging.core.operations.base_filter) find_all_files() (mantidimaging.core.io.filenames.FilenameGroup method) find_center() (in module mantidimaging.core.rotation.polyfit_correlation) find_cor() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method) find_first_file_that_is_possibly_a_sample() (in module mantidimaging.core.io.utility) find_log_file() (mantidimaging.core.io.filenames.FilenameGroup method) find_memory_from_previous_process_linux() (in module mantidimaging.core.parallel.manager) find_projection_closest_to_180() (in module mantidimaging.core.io.utility) find_related() (mantidimaging.core.io.filenames.FilenameGroup method) first_file() (mantidimaging.core.io.filenames.FilenameGroup method) flat_after (mantidimaging.core.data.dataset.StrictDataset attribute) flat_before (mantidimaging.core.data.dataset.StrictDataset attribute) FlatFieldFilter (class in mantidimaging.core.operations.flat_fielding.flat_fielding) free_shared_memory_linux() (in module mantidimaging.core.parallel.manager) from_file() (mantidimaging.core.io.filenames.FilenameGroup class method) from_name() (mantidimaging.core.io.filenames.FilenamePattern class method) (mantidimaging.core.io.filenames.FilenamePatternGolden class method) from_serialized() (mantidimaging.core.operation_history.operations.ImageOperation static method) full() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method)

G

GaussianFilter (class in mantidimaging.core.operations.gaussian.gaussian) generate() (mantidimaging.core.io.filenames.FilenamePattern method) (mantidimaging.core.io.filenames.FilenamePatternGolden method) generate_mi_shared_mem_name() (in module mantidimaging.core.parallel.manager) generate_names() (in module mantidimaging.core.io.saver) get_all_cors_from_regression() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) get_cor_from_regression() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) get_data() (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) get_images_from_stack() (mantidimaging.core.operations.base_filter.BaseFilter static method) get_index() (mantidimaging.core.io.filenames.FilenamePattern method) (mantidimaging.core.io.filenames.FilenamePatternGolden method) get_loader() (in module mantidimaging.core.io.loader.loader) get_pattern_class() (mantidimaging.core.io.filenames.FilenameGroup class method)

get_reconstructor_for() (in module mantidimaging.core.reconstruct) get_search_range() (in module mantidimaging.core.rotation.polyfit_correlation) gpu_available() (in module mantidimaging.core.gpu.utility) gradient (mantidimaging.core.rotation.data_model.CorTiltDataModel property) group_name() (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method)

H

h_middle (mantidimaging.core.data.imagestack.ImageStack property) has_proj180deg() (mantidimaging.core.data.imagestack.ImageStack method)

has_results (mantidimaging.core.rotation.data_model.CorTiltDataModel property) has_shared_memory (mantidimaging.core.parallel.utility.SharedArray property) height (mantidimaging.core.data.imagestack.ImageStack property)

I

id (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.data.reconlist.ReconList property) ids (mantidimaging.core.data.reconlist.ReconList property) image_keys (mantidimaging.core.data.dataset.StrictDataset property) image_save() (in module mantidimaging.core.io.saver) image_stacks (mantidimaging.core.io.loader.loader.LoadingParameters attribute) ImageLoadDialogTest (class in mantidimaging.eyes_tests.image_load_dialog_test) ImageLoader (class in mantidimaging.core.io.loader.img_loader) ImageOperation (class in mantidimaging.core.operation_history.operations) ImageParameters (class in mantidimaging.core.io.loader.loader) ImageSaveDialogTest (class in mantidimaging.eyes_tests.image_save_dialog_test)

ImageStack (class in mantidimaging.core.data.imagestack) imaging (mantidimaging.eyes_tests.base_eyes.BaseEyesTest property) indices (mantidimaging.core.io.loader.loader.ImageParameters attribute) initialise_logging() (in module mantidimaging.helper) inplace1() (in module mantidimaging.core.parallel.shared) inplace2() (in module mantidimaging.core.parallel.shared) inplace3() (in module mantidimaging.core.parallel.shared) inplace_second_2d() (in module mantidimaging.core.parallel.shared) is_processed (mantidimaging.core.data.dataset.StrictDataset property) (mantidimaging.core.data.imagestack.ImageStack property) is_sinograms (mantidimaging.core.data.imagestack.ImageStack property) iter_points() (mantidimaging.core.rotation.data_model.CorTiltDataModel method)

K

KernelSpinBox (class in mantidimaging.core.operations.median_filter.median_filter)

L

linear_regression() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) link_histograms (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter attribute) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter attribute) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter attribute) (mantidimaging.core.operations.divide.divide.DivideFilter attribute) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter attribute) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter attribute) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation attribute) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter attribute) (mantidimaging.core.operations.outliers.outliers.OutliersFilter attribute) (mantidimaging.core.operations.rebin.rebin.RebinFilter attribute) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter attribute) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter attribute) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter attribute) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter attribute) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter attribute) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter attribute) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter attribute) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter attribute)

load() (in module mantidimaging.core.io.loader.loader) load_files() (mantidimaging.core.io.loader.img_loader.ImageLoader method) load_filter_packages() (in module mantidimaging.core.operations.loader) load_log() (in module mantidimaging.core.io.loader.loader) load_metadata() (mantidimaging.core.data.imagestack.ImageStack method) load_sample_data() (mantidimaging.core.io.loader.img_loader.ImageLoader method) load_stack_from_group() (in module mantidimaging.core.io.loader.loader) load_stack_from_image_params() (in module mantidimaging.core.io.loader.loader) LoadingParameters (class in mantidimaging.core.io.loader.loader) log_file (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.io.loader.loader.ImageParameters attribute)

M

main() (in module mantidimaging.ipython) (in module mantidimaging.main) MainWindowTest (class in mantidimaging.eyes_tests.main_window_test) make_dirs_if_needed() (in module mantidimaging.core.io.saver) make_name_unique() (mantidimaging.core.data.imagestack.ImageStack method) mantidimaging module mantidimaging.core module mantidimaging.core.data module mantidimaging.core.data.dataset module mantidimaging.core.data.imagestack module mantidimaging.core.data.reconlist module mantidimaging.core.data.utility module mantidimaging.core.gpu module mantidimaging.core.gpu.utility module mantidimaging.core.io module mantidimaging.core.io.csv_output module mantidimaging.core.io.filenames module mantidimaging.core.io.loader module mantidimaging.core.io.loader.img_loader module mantidimaging.core.io.loader.loader module mantidimaging.core.io.saver module mantidimaging.core.io.utility module mantidimaging.core.net module mantidimaging.core.net.help_pages module mantidimaging.core.operation_history module mantidimaging.core.operation_history.const module mantidimaging.core.operation_history.operations module mantidimaging.core.operations module mantidimaging.core.operations.arithmetic module mantidimaging.core.operations.arithmetic.arithmetic module mantidimaging.core.operations.base_filter module mantidimaging.core.operations.circular_mask module mantidimaging.core.operations.circular_mask.circular_mask module mantidimaging.core.operations.clip_values module mantidimaging.core.operations.clip_values.clip_values module mantidimaging.core.operations.crop_coords module mantidimaging.core.operations.crop_coords.crop_coords module mantidimaging.core.operations.divide module mantidimaging.core.operations.divide.divide module mantidimaging.core.operations.flat_fielding module mantidimaging.core.operations.flat_fielding.flat_fielding module mantidimaging.core.operations.gaussian module mantidimaging.core.operations.gaussian.gaussian module mantidimaging.core.operations.loader module mantidimaging.core.operations.median_filter module mantidimaging.core.operations.median_filter.median_filter module mantidimaging.core.operations.monitor_normalisation module mantidimaging.core.operations.monitor_normalisation.monitor_normalisation module mantidimaging.core.operations.nan_removal module mantidimaging.core.operations.nan_removal.nan_removal module mantidimaging.core.operations.outliers module mantidimaging.core.operations.outliers.outliers module mantidimaging.core.operations.rebin module mantidimaging.core.operations.rebin.rebin module mantidimaging.core.operations.remove_all_stripe module mantidimaging.core.operations.remove_all_stripe.remove_all_stripe module mantidimaging.core.operations.remove_dead_stripe module mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe module mantidimaging.core.operations.remove_large_stripe module mantidimaging.core.operations.remove_large_stripe.remove_large_stripe module mantidimaging.core.operations.remove_stripe_filtering module mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering module mantidimaging.core.operations.remove_stripe_sorting_fitting module mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting module mantidimaging.core.operations.rescale module mantidimaging.core.operations.rescale.rescale module mantidimaging.core.operations.rescale.rescale_test module mantidimaging.core.operations.ring_removal module mantidimaging.core.operations.ring_removal.ring_removal module mantidimaging.core.operations.roi_normalisation module mantidimaging.core.operations.roi_normalisation.roi_normalisation module mantidimaging.core.operations.rotate_stack module mantidimaging.core.operations.rotate_stack.rotate_stack module mantidimaging.core.parallel module mantidimaging.core.parallel.manager module mantidimaging.core.parallel.shared module mantidimaging.core.parallel.utility module mantidimaging.core.reconstruct module mantidimaging.core.reconstruct.astra_recon module

mantidimaging.core.reconstruct.base_recon module mantidimaging.core.reconstruct.cil_recon module mantidimaging.core.reconstruct.tomopy_recon module mantidimaging.core.rotation module mantidimaging.core.rotation.data_model module mantidimaging.core.rotation.polyfit_correlation module mantidimaging.eyes_tests module mantidimaging.eyes_tests.base_eyes module mantidimaging.eyes_tests.compare_images_window_test module mantidimaging.eyes_tests.eyes_manager module mantidimaging.eyes_tests.image_load_dialog_test module mantidimaging.eyes_tests.image_save_dialog_test module mantidimaging.eyes_tests.main_window_test module mantidimaging.eyes_tests.nexus_load_dialog_test module mantidimaging.eyes_tests.nexus_save_dialog_test module mantidimaging.eyes_tests.operations_window_test module mantidimaging.eyes_tests.reconstruct_window_test module mantidimaging.eyes_tests.welcome_window_test module mantidimaging.helper module mantidimaging.ipython module mantidimaging.main module mark_cropped() (in module mantidimaging.core.data.utility) match() (mantidimaging.core.io.filenames.FilenamePattern method) match_metadata() (mantidimaging.core.io.filenames.FilenamePattern method) median_filter() (mantidimaging.core.gpu.utility.CudaExecuter method) MedianFilter (class in mantidimaging.core.operations.median_filter.median_filter) MixedDataset (class in mantidimaging.core.data.dataset) MODES (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter attribute) modes() (in module mantidimaging.core.operations.gaussian.gaussian) (in module mantidimaging.core.operations.median_filter.median_filter) (in module mantidimaging.core.operations.outliers.outliers) (in module mantidimaging.core.operations.rebin.rebin) (in module mantidimaging.core.operations.roi_normalisation.roi_normalisation) module mantidimaging mantidimaging.core mantidimaging.core.data mantidimaging.core.data.dataset mantidimaging.core.data.imagestack mantidimaging.core.data.reconlist mantidimaging.core.data.utility mantidimaging.core.gpu mantidimaging.core.gpu.utility mantidimaging.core.io mantidimaging.core.io.csv_output mantidimaging.core.io.filenames mantidimaging.core.io.loader mantidimaging.core.io.loader.img_loader mantidimaging.core.io.loader.loader mantidimaging.core.io.saver mantidimaging.core.io.utility mantidimaging.core.net mantidimaging.core.net.help_pages mantidimaging.core.operation_history mantidimaging.core.operation_history.const mantidimaging.core.operation_history.operations mantidimaging.core.operations mantidimaging.core.operations.arithmetic mantidimaging.core.operations.arithmetic.arithmetic mantidimaging.core.operations.base_filter mantidimaging.core.operations.circular_mask mantidimaging.core.operations.circular_mask.circular_mask mantidimaging.core.operations.clip_values mantidimaging.core.operations.clip_values.clip_values mantidimaging.core.operations.crop_coords mantidimaging.core.operations.crop_coords.crop_coords mantidimaging.core.operations.divide mantidimaging.core.operations.divide.divide mantidimaging.core.operations.flat_fielding mantidimaging.core.operations.flat_fielding.flat_fielding mantidimaging.core.operations.gaussian mantidimaging.core.operations.gaussian.gaussian mantidimaging.core.operations.loader mantidimaging.core.operations.median_filter mantidimaging.core.operations.median_filter.median_filter mantidimaging.core.operations.monitor_normalisation mantidimaging.core.operations.monitor_normalisation.monitor_normalisation mantidimaging.core.operations.nan_removal mantidimaging.core.operations.nan_removal.nan_removal mantidimaging.core.operations.outliers mantidimaging.core.operations.outliers.outliers mantidimaging.core.operations.rebin mantidimaging.core.operations.rebin.rebin mantidimaging.core.operations.remove_all_stripe mantidimaging.core.operations.remove_all_stripe.remove_all_stripe mantidimaging.core.operations.remove_dead_stripe mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe mantidimaging.core.operations.remove_large_stripe mantidimaging.core.operations.remove_large_stripe.remove_large_stripe mantidimaging.core.operations.remove_stripe_filtering mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering mantidimaging.core.operations.remove_stripe_sorting_fitting mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting mantidimaging.core.operations.rescale mantidimaging.core.operations.rescale.rescale mantidimaging.core.operations.rescale.rescale_test mantidimaging.core.operations.ring_removal mantidimaging.core.operations.ring_removal.ring_removal mantidimaging.core.operations.roi_normalisation mantidimaging.core.operations.roi_normalisation.roi_normalisation mantidimaging.core.operations.rotate_stack mantidimaging.core.operations.rotate_stack.rotate_stack mantidimaging.core.parallel mantidimaging.core.parallel.manager mantidimaging.core.parallel.shared mantidimaging.core.parallel.utility mantidimaging.core.reconstruct mantidimaging.core.reconstruct.astra_recon mantidimaging.core.reconstruct.base_recon mantidimaging.core.reconstruct.cil_recon mantidimaging.core.reconstruct.tomopy_recon mantidimaging.core.rotation mantidimaging.core.rotation.data_model mantidimaging.core.rotation.polyfit_correlation mantidimaging.eyes_tests mantidimaging.eyes_tests.base_eyes mantidimaging.eyes_tests.compare_images_window_test mantidimaging.eyes_tests.eyes_manager mantidimaging.eyes_tests.image_load_dialog_test mantidimaging.eyes_tests.image_save_dialog_test mantidimaging.eyes_tests.main_window_test mantidimaging.eyes_tests.nexus_load_dialog_test mantidimaging.eyes_tests.nexus_save_dialog_test mantidimaging.eyes_tests.operations_window_test mantidimaging.eyes_tests.reconstruct_window_test mantidimaging.eyes_tests.welcome_window_test mantidimaging.helper mantidimaging.ipython mantidimaging.main MonitorNormalisation (class in mantidimaging.core.operations.monitor_normalisation.monitor_normalisation) multiprocessing_necessary() (in module mantidimaging.core.parallel.utility)

N

name (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.imagestack.ImageStack attribute) (mantidimaging.core.io.loader.loader.LoadingParameters attribute) NaNRemovalFilter (class in mantidimaging.core.operations.nan_removal.nan_removal) negative_log() (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) nexus_arrays (mantidimaging.core.data.dataset.StrictDataset property) nexus_rotation_angles (mantidimaging.core.data.dataset.StrictDataset property)

nexus_save() (in module mantidimaging.core.io.saver) NexusLoadDialogTest (class in mantidimaging.eyes_tests.nexus_load_dialog_test) NexusSaveDialogTest (class in mantidimaging.eyes_tests.nexus_save_dialog_test) NoGroup (mantidimaging.core.operations.base_filter.FilterGroup attribute) num_images (mantidimaging.core.data.imagestack.ImageStack property) num_points (mantidimaging.core.rotation.data_model.CorTiltDataModel property) num_projections (mantidimaging.core.data.imagestack.ImageStack property) num_sinograms (mantidimaging.core.data.imagestack.ImageStack property)

O

open_help_webpage() (in module mantidimaging.core.net.help_pages) open_user_operation_docs() (in module mantidimaging.core.net.help_pages) operate_on_sinograms (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter attribute) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter attribute) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter attribute) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter attribute) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter attribute)

OperationModule (class in mantidimaging.core.operations.loader) OperationsWindowTest (class in mantidimaging.eyes_tests.operations_window_test) ops_to_partials() (in module mantidimaging.core.operation_history.operations) OutliersFilter (class in mantidimaging.core.operations.outliers.outliers)

P

parse_args() (in module mantidimaging.main) PATTERN (mantidimaging.core.io.filenames.FilenamePattern attribute) (mantidimaging.core.io.filenames.FilenamePatternGolden attribute) PATTERN_a (mantidimaging.core.io.filenames.FilenamePatternGolden attribute) PATTERN_d (mantidimaging.core.io.filenames.FilenamePattern attribute) (mantidimaging.core.io.filenames.FilenamePatternGolden attribute) PATTERN_p (mantidimaging.core.io.filenames.FilenamePattern attribute) (mantidimaging.core.io.filenames.FilenamePatternGolden attribute) PATTERN_s (mantidimaging.core.io.filenames.FilenamePattern attribute) (mantidimaging.core.io.filenames.FilenamePatternGolden attribute)

pixel_size (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.io.loader.loader.LoadingParameters attribute) Point (class in mantidimaging.core.rotation.data_model) point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) populate_slice_indices() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) prepare_sinogram() (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) proj180deg (mantidimaging.core.data.dataset.StrictDataset property) (mantidimaging.core.data.imagestack.ImageStack property) projection() (mantidimaging.core.data.imagestack.ImageStack method) projection_angles() (mantidimaging.core.data.imagestack.ImageStack method) projections (mantidimaging.core.data.imagestack.ImageStack property)

R

raise_not_implemented() (in module mantidimaging.core.operations.base_filter) read_image_dimensions() (in module mantidimaging.core.io.loader.loader) real_projection_angles() (mantidimaging.core.data.imagestack.ImageStack method) RebinFilter (class in mantidimaging.core.operations.rebin.rebin) ReconList (class in mantidimaging.core.data.reconlist) ReconstructionWindowTest (class in mantidimaging.eyes_tests.reconstruct_window_test) record_operation() (mantidimaging.core.data.imagestack.ImageStack method) register_gui() (mantidimaging.core.operations.arithmetic.arithmetic.ArithmeticFilter static method) (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.circular_mask.circular_mask.CircularMaskFilter static method) (mantidimaging.core.operations.clip_values.clip_values.ClipValuesFilter static method) (mantidimaging.core.operations.crop_coords.crop_coords.CropCoordinatesFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.gaussian.gaussian.GaussianFilter static method) (mantidimaging.core.operations.median_filter.median_filter.MedianFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.nan_removal.nan_removal.NaNRemovalFilter static method) (mantidimaging.core.operations.outliers.outliers.OutliersFilter static method) (mantidimaging.core.operations.rebin.rebin.RebinFilter static method) (mantidimaging.core.operations.remove_all_stripe.remove_all_stripe.RemoveAllStripesFilter static method) (mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe.RemoveDeadStripesFilter static method) (mantidimaging.core.operations.remove_large_stripe.remove_large_stripe.RemoveLargeStripesFilter static method) (mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering.RemoveStripeFilteringFilter static method) (mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting.RemoveStripeSortingFittingFilter static method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter static method) (mantidimaging.core.operations.roi_normalisation.roi_normalisation.RoiNormalisationFilter static method) (mantidimaging.core.operations.rotate_stack.rotate_stack.RotateFilter static method)

remove_point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) RemoveAllStripesFilter (class in mantidimaging.core.operations.remove_all_stripe.remove_all_stripe) RemoveDeadStripesFilter (class in mantidimaging.core.operations.remove_dead_stripe.remove_dead_stripe) RemoveLargeStripesFilter (class in mantidimaging.core.operations.remove_large_stripe.remove_large_stripe) RemoveStripeFilteringFilter (class in mantidimaging.core.operations.remove_stripe_filtering.remove_stripe_filtering) RemoveStripeSortingFittingFilter (class in mantidimaging.core.operations.remove_stripe_sorting_fitting.remove_stripe_sorting_fitting) RescaleFilter (class in mantidimaging.core.operations.rescale.rescale) return_to_second_at_i() (in module mantidimaging.core.parallel.shared) return_to_self() (in module mantidimaging.core.parallel.shared) RingRemovalFilter (class in mantidimaging.core.operations.ring_removal.ring_removal) RoiNormalisationFilter (class in mantidimaging.core.operations.roi_normalisation.roi_normalisation) RotateFilter (class in mantidimaging.core.operations.rotate_stack.rotate_stack) rotation_matrix2d() (in module mantidimaging.core.reconstruct.astra_recon) run_compute_func() (in module mantidimaging.core.parallel.shared) run_compute_func_impl() (in module mantidimaging.core.parallel.utility)

S

sample (mantidimaging.core.data.dataset.StrictDataset attribute) save_metadata() (mantidimaging.core.data.imagestack.ImageStack method) serialize() (mantidimaging.core.operation_history.operations.ImageOperation method) set_approx_norm() (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) set_batch() (mantidimaging.eyes_tests.eyes_manager.EyesManager method) set_cor_at_slice() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) set_match_level() (mantidimaging.eyes_tests.eyes_manager.EyesManager method) set_point() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) set_precalculated() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) set_projection_angles() (mantidimaging.core.data.imagestack.ImageStack method) set_stack() (mantidimaging.core.data.dataset.StrictDataset method) set_up_TV_regularisation() (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) setUp() (mantidimaging.eyes_tests.base_eyes.BaseEyesTest method) (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) (mantidimaging.eyes_tests.welcome_window_test.WelcomeWindowTest method) setUpClass() (mantidimaging.eyes_tests.base_eyes.BaseEyesTest class method) shared_array (mantidimaging.core.data.imagestack.ImageStack property) SharedArray (class in mantidimaging.core.parallel.utility) SharedArrayProxy (class in mantidimaging.core.parallel.utility) show_menu() (mantidimaging.eyes_tests.base_eyes.BaseEyesTest static method)

show_negative_overlay (mantidimaging.core.operations.base_filter.BaseFilter attribute) (mantidimaging.core.operations.ring_removal.ring_removal.RingRemovalFilter attribute) single_sino() (mantidimaging.core.reconstruct.astra_recon.AstraRecon static method) (mantidimaging.core.reconstruct.base_recon.BaseRecon static method) (mantidimaging.core.reconstruct.cil_recon.CILRecon static method) (mantidimaging.core.reconstruct.tomopy_recon.TomopyRecon static method) sino() (mantidimaging.core.data.imagestack.ImageStack method) sino_as_image_stack() (mantidimaging.core.data.imagestack.ImageStack method) SINOGRAM_FILTER_INFO (mantidimaging.core.operations.base_filter.BaseFilter attribute) sinograms (mantidimaging.core.data.dataset.BaseDataset property) (mantidimaging.core.data.imagestack.ImageStack property) (mantidimaging.core.io.loader.loader.LoadingParameters attribute) slice_as_array() (mantidimaging.core.data.imagestack.ImageStack method) slice_as_image_stack() (mantidimaging.core.data.imagestack.ImageStack method) slice_index (mantidimaging.core.rotation.data_model.Point attribute) slices (mantidimaging.core.rotation.data_model.CorTiltDataModel property) sort_points() (mantidimaging.core.rotation.data_model.CorTiltDataModel method) stack_properties (mantidimaging.core.rotation.data_model.CorTiltDataModel property) stacks (mantidimaging.core.data.reconlist.ReconList property) start_imaging() (mantidimaging.eyes_tests.eyes_manager.EyesManager method) StrictDataset (class in mantidimaging.core.data.dataset) supported_formats() (in module mantidimaging.core.io.loader.loader) sv_params() (mantidimaging.core.operations.base_filter.BaseFilter static method)

T

tearDown() (mantidimaging.eyes_tests.base_eyes.BaseEyesTest method) (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) tearDownClass() (mantidimaging.eyes_tests.base_eyes.BaseEyesTest class method) test_about_window_bad_conda() (mantidimaging.eyes_tests.welcome_window_test.WelcomeWindowTest method) test_about_window_bad_cuda() (mantidimaging.eyes_tests.welcome_window_test.WelcomeWindowTest method) test_about_window_good_conda() (mantidimaging.eyes_tests.welcome_window_test.WelcomeWindowTest method) test_about_window_good_cuda() (mantidimaging.eyes_tests.welcome_window_test.WelcomeWindowTest method) test_clicking_tab_changes_tree_view_selection() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_compare_images_window_opens() (mantidimaging.eyes_tests.compare_images_window_test.CompareImagesWindowTest method) test_execute_wrapper_no_preset() (in module mantidimaging.core.operations.rescale.rescale_test) test_execute_wrapper_with_preset() (in module mantidimaging.core.operations.rescale.rescale_test) test_load_dialog_opens() (mantidimaging.eyes_tests.image_load_dialog_test.ImageLoadDialogTest method) (mantidimaging.eyes_tests.nexus_load_dialog_test.NexusLoadDialogTest method) test_load_dialog_selected_dataset() (mantidimaging.eyes_tests.image_load_dialog_test.ImageLoadDialogTest method) test_load_nexus_file_creates_stack() (mantidimaging.eyes_tests.nexus_load_dialog_test.NexusLoadDialogTest method) test_load_nexus_file_populates_window() (mantidimaging.eyes_tests.nexus_load_dialog_test.NexusLoadDialogTest method) test_main_window_file_menu() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_file_menu_image_loaded() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_help_menu() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_image_menu() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_loaded_2_sets_of_data() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_loaded_data() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_opens() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_opens_image_loaded() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_workflow_menu() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_main_window_workflow_menu_image_loaded() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_move_stack_dialog_both_mixed() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_move_stack_dialog_mixed_to_strict() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_move_stack_dialog_strict_to_mixed() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_move_stack_dialog_when_both_strict() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_negative_nan_overlay() (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) test_operation_window_after_data_was_processed() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operation_window_opens() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operation_window_opens_with_data() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_arithmetic_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_circular_mask_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method)

test_operations_clip_values_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_crop_coordinates_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_divide_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_flat_fielding_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_gaussian_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_median_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_monitor_normalisation_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_nan_removal_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_rebin_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_remove_all_stripes_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_remove_dead_stripes_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_remove_large_stripes_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_remove_outliers_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_remove_stripes_with_filtering_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_remove_stripes_with_sorting_and_fitting_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_rescale_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_ring_removal_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_ROI_normalisation_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_roi_visualiser_window() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_operations_rotate_stack_parameters() (mantidimaging.eyes_tests.operations_window_test.OperationsWindowTest method) test_reconstruction_window_colour_palette_dialog() (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) test_reconstruction_window_cor_and_tilt_tab() (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) test_reconstruction_window_opens() (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) test_reconstruction_window_opens_with_data() (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) test_reconstruction_window_reconstruct_tab() (mantidimaging.eyes_tests.reconstruct_window_test.ReconstructionWindowTest method) test_rescale() (in module mantidimaging.core.operations.rescale.rescale_test) test_rescale_ignores_nans() (in module mantidimaging.core.operations.rescale.rescale_test) test_save_dialog_opens_with_dataset() (mantidimaging.eyes_tests.image_save_dialog_test.ImageSaveDialogTest method) (mantidimaging.eyes_tests.nexus_save_dialog_test.NexusSaveDialogTest method) test_save_dialog_opens_with_no_dataset() (mantidimaging.eyes_tests.image_save_dialog_test.ImageSaveDialogTest method) test_scale_single_image() (in module mantidimaging.core.operations.rescale.rescale_test) test_scale_single_image_bad_offset() (in module mantidimaging.core.operations.rescale.rescale_test) test_show_add_stack_to_existing_dataset_dialog_for_mixed_dataset() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_show_add_stack_to_existing_dataset_dialog_for_strict_dataset() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) test_single_click_changes_tab() (mantidimaging.eyes_tests.main_window_test.MainWindowTest method) to_partial() (mantidimaging.core.operation_history.operations.ImageOperation method) TomopyRecon (class in mantidimaging.core.reconstruct.tomopy_recon)

U

uses_shared_memory (mantidimaging.core.data.imagestack.ImageStack property)

V

validate() (mantidimaging.core.operations.median_filter.median_filter.KernelSpinBox method) validate_execute_kwargs() (mantidimaging.core.operations.base_filter.BaseFilter static method) (mantidimaging.core.operations.divide.divide.DivideFilter static method) (mantidimaging.core.operations.flat_fielding.flat_fielding.FlatFieldFilter static method) (mantidimaging.core.operations.monitor_normalisation.monitor_normalisation.MonitorNormalisation static method) (mantidimaging.core.operations.rescale.rescale.RescaleFilter static method)

vec_geom_init2d() (in module mantidimaging.core.reconstruct.astra_recon)

W

WelcomeWindowTest (class in mantidimaging.eyes_tests.welcome_window_test) width (mantidimaging.core.data.imagestack.ImageStack property) write() (mantidimaging.core.io.csv_output.CSVOutput method)

write_fits() (in module mantidimaging.core.io.saver) write_img() (in module mantidimaging.core.io.saver) write_nxs() (in module mantidimaging.core.io.saver)